Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B01
         (99 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)                 40   3e-04
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)                 31   0.15 
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)           27   3.2  
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 26   4.3  
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  

>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 362

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 23/28 (82%)
 Frame = +1

Query: 16  DVVDLTPSKFDRLVTNSDEVWIVEFYAP 99
           DVV+LT + F++ V NS ++W+VEF+AP
Sbjct: 80  DVVELTDTNFEKEVLNSKDLWLVEFFAP 107


>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 295

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 19  VVDLTPSKFDRLVTNSDEVWIVEFYAP 99
           V+DLT   FD +V N ++  +VEFYAP
Sbjct: 24  VIDLTKDNFDEVV-NGEKFALVEFYAP 49


>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 13  SDVVDLTPSKFDRLVTNSDEVWIVEFYAP 99
           S V ++    F   V  S++ W+V+FYAP
Sbjct: 433 SIVSEVNSKNFFTDVLASEDAWVVDFYAP 461



 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 10  SSDVVDLTPSKFDRLVTNSDEVWIVEFYAP 99
           SS+V  L P  F   VT+    + V+F+AP
Sbjct: 283 SSNVHALGPEDFPSSVTSPSRPFFVDFFAP 312


>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
          Length = 975

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 19  VVDLTPSKFDRLVTNSDEVWIVEFYAP 99
           V ++T   FD +V N+D+  ++ FY P
Sbjct: 519 VTEVTTDSFDDIVINNDQDVLLVFYTP 545


>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 10  SSDVVDLTPSKFDRLVTNSDEVWIVEFYAP 99
           S  V  L    FD +  N D+   VEFYAP
Sbjct: 383 SKPVKVLCGKNFDEVARNKDKNVFVEFYAP 412


>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 16  DVVDLTPSKFDRLVTNSDEVWIVEFYAP 99
           DV  L    FDR++  ++ + +VEFYAP
Sbjct: 62  DVSVLNSKNFDRVIEENNII-LVEFYAP 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,703
Number of Sequences: 59808
Number of extensions: 22833
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 16,821,457
effective HSP length: 13
effective length of database: 16,043,953
effective search space used: 304835107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)