Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B01
         (99 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   4.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    18   9.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    18   9.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    18   9.3  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    18   9.3  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    18   9.3  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    18   9.3  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    18   9.3  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.4 bits (38), Expect = 4.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 37  SESNQPHQKSL 5
           S +N PHQK L
Sbjct: 350 SVTNSPHQKKL 360


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/28 (21%), Positives = 14/28 (50%)
 Frame = +1

Query: 4   RGSSDVVDLTPSKFDRLVTNSDEVWIVE 87
           R   + +DL     +  + +  EVW+++
Sbjct: 19  RNEDNKIDLRSRTKEERLQHRREVWLIQ 46


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/28 (21%), Positives = 14/28 (50%)
 Frame = +1

Query: 4   RGSSDVVDLTPSKFDRLVTNSDEVWIVE 87
           R   + +DL     +  + +  EVW+++
Sbjct: 19  RNEDNKIDLRSRTKEERLQHRREVWLIQ 46


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/28 (21%), Positives = 14/28 (50%)
 Frame = +1

Query: 4   RGSSDVVDLTPSKFDRLVTNSDEVWIVE 87
           R   + +DL     +  + +  EVW+++
Sbjct: 19  RNEDNKIDLRSRTKEERLQHRREVWLIQ 46


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/28 (21%), Positives = 14/28 (50%)
 Frame = +1

Query: 4   RGSSDVVDLTPSKFDRLVTNSDEVWIVE 87
           R   + +DL     +  + +  EVW+++
Sbjct: 19  RNEDNKIDLRSRTKEERLQHRREVWLIQ 46


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/28 (21%), Positives = 14/28 (50%)
 Frame = +1

Query: 4   RGSSDVVDLTPSKFDRLVTNSDEVWIVE 87
           R   + +DL     +  + +  EVW+++
Sbjct: 19  RNEDNKIDLRSRTKEERLQHRREVWLIQ 46


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/28 (21%), Positives = 14/28 (50%)
 Frame = +1

Query: 4   RGSSDVVDLTPSKFDRLVTNSDEVWIVE 87
           R   + +DL     +  + +  EVW+++
Sbjct: 19  RNEDNKIDLRSRTKEERLQHRREVWLIQ 46


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/28 (21%), Positives = 14/28 (50%)
 Frame = +1

Query: 4   RGSSDVVDLTPSKFDRLVTNSDEVWIVE 87
           R   + +DL     +  + +  EVW+++
Sbjct: 19  RNEDNKIDLRSRTKEERLQHRREVWLIQ 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,627
Number of Sequences: 438
Number of extensions: 178
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 14
effective length of database: 140,211
effective search space used:  2523798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)