Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A24
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    27   5.1  
Z80214-2|CAB02264.2|  338|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical
           protein F25D7.5 protein.
          Length = 710

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 49  CLFFN--YAKSSIEMQFFFLQNVMYVHFMQFFLKC 147
           C FF+  + K S ++ FFF  NV  +   QFF +C
Sbjct: 278 CKFFSCDFRKKS-KISFFFFGNVSILKNFQFFFRC 311


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 131 CMKCTYITFCKKKNCISI 78
           C+K TY+   +KKNC+ I
Sbjct: 555 CIKLTYLNLTRKKNCLLI 572


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 179  NINKLCPSIQKHFRKNCMKCTYITFCKK 96
            N+ K+C    K+ +K C KC     CKK
Sbjct: 1284 NVQKMCKKCAKNVQKMCKKCA--KMCKK 1309


>Z80214-2|CAB02264.2|  338|Caenorhabditis elegans Hypothetical
           protein C27D8.4 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 139 LKCFCIEGHNLLILTS-YNTYCDSP*DVSYYLWLLMFNFVAKHRRVPVVSIHSCSV 303
           + C+ ++ + L +    Y  Y  S  +++ Y+     N VAK RRV  VS+H  +V
Sbjct: 205 MACYSLDSNFLKVYAGPYQAYASSKLNLAVYV-----NEVAKKRRVNTVSLHPGTV 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,352,066
Number of Sequences: 27780
Number of extensions: 203266
Number of successful extensions: 430
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)