Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A22
         (560 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal prot...   234   5e-62
AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p pro...   234   5e-62
AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,...   234   5e-62
AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,...   234   5e-62
AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,...   234   5e-62
AF208396-1|AAF20209.1|  127|Drosophila melanogaster Hoi-polloi p...    53   2e-07
AE014134-1677|AAF52798.2|  127|Drosophila melanogaster CG3949-PA...    53   2e-07
BT023752-1|AAZ41760.1|  160|Drosophila melanogaster RH66170p pro...    41   0.001
AF217228-1|AAF27630.1|  160|Drosophila melanogaster nucleolar pr...    41   0.001
AE014296-2434|AAF49701.1|  160|Drosophila melanogaster CG5258-PA...    41   0.001
M89628-1|AAB00734.1|  661|Drosophila melanogaster retinal degene...    32   0.46 
BT015959-1|AAV36844.1|  603|Drosophila melanogaster RH46370p pro...    32   0.46 
AE014296-3312|AAF49044.2|  603|Drosophila melanogaster CG6571-PA...    32   0.46 
AE014296-3311|AAO41219.1|  661|Drosophila melanogaster CG6571-PD...    32   0.46 
AE014296-3310|AAO41218.1|  661|Drosophila melanogaster CG6571-PC...    32   0.46 
AE014296-3309|AAO41217.1|  661|Drosophila melanogaster CG6571-PB...    32   0.46 
AE014298-1399|AAF46544.1| 4498|Drosophila melanogaster CG2989-PA...    31   0.81 

>X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal protein
           L7a protein.
          Length = 271

 Score =  234 bits (573), Expect = 5e-62
 Identities = 111/154 (72%), Positives = 125/154 (81%)
 Frame = +1

Query: 97  LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 276
           LFEKR KNF IGQ++QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKT
Sbjct: 36  LFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKT 95

Query: 277 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 456
           TA  LFK+LEKYRPE+                   D  P K+P+ + AGTNTVTKL+E+K
Sbjct: 96  TAVKLFKLLEKYRPESALAKNVRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQK 155

Query: 457 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 558
           KAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIV
Sbjct: 156 KAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIV 189


>AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p
           protein.
          Length = 271

 Score =  234 bits (573), Expect = 5e-62
 Identities = 111/154 (72%), Positives = 125/154 (81%)
 Frame = +1

Query: 97  LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 276
           LFEKR KNF IGQ++QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKT
Sbjct: 36  LFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKT 95

Query: 277 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 456
           TA  LFK+LEKYRPE+                   D  P K+P+ + AGTNTVTKL+E+K
Sbjct: 96  TAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQK 155

Query: 457 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 558
           KAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIV
Sbjct: 156 KAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIV 189


>AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,
           isoform D protein.
          Length = 271

 Score =  234 bits (573), Expect = 5e-62
 Identities = 111/154 (72%), Positives = 125/154 (81%)
 Frame = +1

Query: 97  LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 276
           LFEKR KNF IGQ++QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKT
Sbjct: 36  LFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKT 95

Query: 277 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 456
           TA  LFK+LEKYRPE+                   D  P K+P+ + AGTNTVTKL+E+K
Sbjct: 96  TAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQK 155

Query: 457 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 558
           KAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIV
Sbjct: 156 KAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIV 189


>AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,
           isoform C protein.
          Length = 271

 Score =  234 bits (573), Expect = 5e-62
 Identities = 111/154 (72%), Positives = 125/154 (81%)
 Frame = +1

Query: 97  LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 276
           LFEKR KNF IGQ++QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKT
Sbjct: 36  LFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKT 95

Query: 277 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 456
           TA  LFK+LEKYRPE+                   D  P K+P+ + AGTNTVTKL+E+K
Sbjct: 96  TAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQK 155

Query: 457 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 558
           KAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIV
Sbjct: 156 KAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIV 189


>AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,
           isoform A protein.
          Length = 271

 Score =  234 bits (573), Expect = 5e-62
 Identities = 111/154 (72%), Positives = 125/154 (81%)
 Frame = +1

Query: 97  LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 276
           LFEKR KNF IGQ++QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKT
Sbjct: 36  LFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKT 95

Query: 277 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 456
           TA  LFK+LEKYRPE+                   D  P K+P+ + AGTNTVTKL+E+K
Sbjct: 96  TAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQK 155

Query: 457 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 558
           KAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIV
Sbjct: 156 KAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIV 189


>AF208396-1|AAF20209.1|  127|Drosophila melanogaster Hoi-polloi
           protein.
          Length = 127

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/51 (47%), Positives = 31/51 (60%)
 Frame = +1

Query: 406 NTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 558
           N LR G N  TK + +  A +VV+A D +PIE++L LP LC    VPY  V
Sbjct: 32  NQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFV 82


>AE014134-1677|AAF52798.2|  127|Drosophila melanogaster CG3949-PA
           protein.
          Length = 127

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/51 (47%), Positives = 31/51 (60%)
 Frame = +1

Query: 406 NTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 558
           N LR G N  TK + +  A +VV+A D +PIE++L LP LC    VPY  V
Sbjct: 32  NQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFV 82


>BT023752-1|AAZ41760.1|  160|Drosophila melanogaster RH66170p
           protein.
          Length = 160

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 397 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 549
           K    LR G   V   + K +  + + A DV P++++  LPA+C + G+PY
Sbjct: 62  KHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPY 112


>AF217228-1|AAF27630.1|  160|Drosophila melanogaster nucleolar
           protein NHP2 protein.
          Length = 160

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 397 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 549
           K    LR G   V   + K +  + + A DV P++++  LPA+C + G+PY
Sbjct: 62  KHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPY 112


>AE014296-2434|AAF49701.1|  160|Drosophila melanogaster CG5258-PA
           protein.
          Length = 160

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 397 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 549
           K    LR G   V   + K +  + + A DV P++++  LPA+C + G+PY
Sbjct: 62  KHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPY 112


>M89628-1|AAB00734.1|  661|Drosophila melanogaster retinal
           degeneration C protein protein.
          Length = 661

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 400 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 501
           RP+  +  T+ VT L +K     +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650


>BT015959-1|AAV36844.1|  603|Drosophila melanogaster RH46370p
           protein.
          Length = 603

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 400 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 501
           RP+  +  T+ VT L +K     +V+ HD+DP +
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 592


>AE014296-3312|AAF49044.2|  603|Drosophila melanogaster CG6571-PA,
           isoform A protein.
          Length = 603

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 400 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 501
           RP+  +  T+ VT L +K     +V+ HD+DP +
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 592


>AE014296-3311|AAO41219.1|  661|Drosophila melanogaster CG6571-PD,
           isoform D protein.
          Length = 661

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 400 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 501
           RP+  +  T+ VT L +K     +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650


>AE014296-3310|AAO41218.1|  661|Drosophila melanogaster CG6571-PC,
           isoform C protein.
          Length = 661

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 400 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 501
           RP+  +  T+ VT L +K     +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650


>AE014296-3309|AAO41217.1|  661|Drosophila melanogaster CG6571-PB,
           isoform B protein.
          Length = 661

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 400 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 501
           RP+  +  T+ VT L +K     +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650


>AE014298-1399|AAF46544.1| 4498|Drosophila melanogaster CG2989-PA
            protein.
          Length = 4498

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 28/91 (30%), Positives = 39/91 (42%)
 Frame = +3

Query: 9    EEA*EEDREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIY 188
            EE+ EED E+ S      EE   +ED KP   E+N +    P    N    P    A   
Sbjct: 3621 EESEEEDEEEDSEEEGDEEEDEEEEDVKPGGEEDNAQEDNKP--KFNSPYKPKDNRAPPG 3678

Query: 189  SHPASKGCVTASSQSAAANQPVHPDIR*NHS 281
            S P      + S  +A+ N P +P  R ++S
Sbjct: 3679 SRPTFGTTGSGSPPTASGNVPYNPRNRPSNS 3709


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,511,520
Number of Sequences: 53049
Number of extensions: 456470
Number of successful extensions: 1167
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2172596895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)