Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A21
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...   158   1e-39
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...   157   3e-39
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003...    27   4.4  
11_08_0005 + 27536091-27536761,27539697-27539890,27540097-275402...    27   5.8  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score =  158 bits (384), Expect = 1e-39
 Identities = 71/132 (53%), Positives = 95/132 (71%)
 Frame = +1

Query: 13  KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 192
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V+C T
Sbjct: 3   KHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQT 62

Query: 193 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 372
           ++Y+ K RAGRGFTL E++A+G+   FA TIGI+VD RR+N+S+E LQ NVQRLK Y+A+
Sbjct: 63  LKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAK 122

Query: 373 LILFPKGKKVLK 408
           L++FP+  + +K
Sbjct: 123 LVIFPRRARKVK 134


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score =  157 bits (381), Expect = 3e-39
 Identities = 70/132 (53%), Positives = 95/132 (71%)
 Frame = +1

Query: 13  KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 192
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V+C T
Sbjct: 3   KHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQT 62

Query: 193 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 372
           ++Y+ K RAGRGFTL E++A+G+   +A TIGI+VD RR+N+S+E LQ NVQRLK Y+A+
Sbjct: 63  LKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAK 122

Query: 373 LILFPKGKKVLK 408
           L++FP+  + +K
Sbjct: 123 LVIFPRRARKVK 134


>05_04_0020 -
           17199627-17199947,17200129-17200203,17200301-17200384,
           17200483-17200562,17201354-17201508,17202602-17203215
          Length = 442

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 332 NDSTDLLRLRGSTAIPIVLAKEGFNPEALISRRVNPLPARTFV**RT-VGQRTTGLR 165
           + ST      GSTA    LA+  F+ E  +SRR   LPAR FV  +  +G +  GLR
Sbjct: 73  SSSTPAAAAAGSTAAN-PLAR--FSVEPAVSRRQQQLPARQFVGGKVPLGLKRKGLR 126


>11_08_0005 +
           27536091-27536761,27539697-27539890,27540097-27540255,
           27540385-27541493
          Length = 710

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 373 DELYIPSTFEH*SVMIPLICCVYVGQQQYQLFWQKKGSIQKPL 245
           DEL + S  +H +V+  L CC+   +    L +   GS++K L
Sbjct: 472 DELRVQSLIQHENVVTLLGCCMETEEPTLILEFIPNGSLEKKL 514


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,686,975
Number of Sequences: 37544
Number of extensions: 191569
Number of successful extensions: 390
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)