Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A19
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   3.1  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   5.4  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   5.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   5.4  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    24   9.4  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    24   9.4  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    24   9.4  

>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 377 KYHTVRAQLLK*SRHLGMHSICHIVQHQQRNHLQ 276
           +YH +R   +K  RHLG+   C++      N L+
Sbjct: 337 EYHMLRTAAIKIIRHLGVVGECNVQYALSPNSLE 370


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 206 KPANPPARVIEESEKDAEITSSCPED 283
           KP    +  IE++E DAE+     ED
Sbjct: 28  KPVTKMSSYIEDAESDAELPQDAKED 53


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 209 PANPPARVIEESEKDAEITSSCPEDGFFADA 301
           P+NP A     S  D+ IT++   DG   D+
Sbjct: 90  PSNPTAHSPSSSSNDSVITATGVPDGILRDS 120


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 87   VTDRLVFQNKTRWRL 131
            +T R + +NKTRW L
Sbjct: 2259 ITSRFIVRNKTRWSL 2273


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +2

Query: 197 GKKKPANPPARVIEESEKDAEITSSCPEDGFFADAEQCDKY 319
           G   P N  A  ++  +   +ITS  P +       +C++Y
Sbjct: 28  GVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERY 68


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 180 DTKTNKHARKTKPTHDLNAILFYFETLTYQSLNP 79
           D+    H++    THDLN +  Y+ T +  S+ P
Sbjct: 487 DSSNAPHSQSAA-THDLNDVKSYYNTRSSHSVVP 519


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 291 KKPSSGHELVISAS 250
           +KPSSG +L++SAS
Sbjct: 458 EKPSSGSQLILSAS 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,395,965
Number of Sequences: 5004
Number of extensions: 22398
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)