Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A19
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0002 + 3386-3541,3619-3717,4114-4182,4275-4459,4662-4677         28   2.2  
06_01_1108 - 9125440-9125845,9125850-9126244                           28   2.2  
07_01_0437 - 3322132-3322251,3322345-3322569,3322953-3323120,332...    27   3.8  
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514           26   8.9  
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951...    26   8.9  
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294           26   8.9  

>11_01_0002 + 3386-3541,3619-3717,4114-4182,4275-4459,4662-4677
          Length = 174

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 183 DDTKTNKHARKTKPTHDLNAILFYFETLTYQSLNPYLNVTYK 58
           DD  TNK+ R+++P    +A  F+    T  +  PY  +T++
Sbjct: 11  DDLITNKYKRRSRPDPAPSARRFHSRAATRAAAAPYHAITFQ 52


>06_01_1108 - 9125440-9125845,9125850-9126244
          Length = 266

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 357 TASQVISPSWHA*YLSHCSASAKKPSSGH 271
           TAS  ++P W   ++ H  ASA   + GH
Sbjct: 126 TASMAVTPPWPVRHVPHLCASAAAAAEGH 154


>07_01_0437 -
           3322132-3322251,3322345-3322569,3322953-3323120,
           3323207-3323322,3323394-3323546,3323655-3323798,
           3324475-3325255
          Length = 568

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 191 PRGKKKPANPPARVIEESEKDAEITSSCPEDGFFADAE 304
           P G+ +P+ PP     ES   +  +S+ PE    AD++
Sbjct: 29  PGGRAEPSQPPGYPPRESSHSSVTSSTAPERVTIADSD 66


>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
          Length = 130

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 294 LMLNNVTNTMHAKMARSLEKLCPD 365
           L LN +  T+ +K  ++LEK+C D
Sbjct: 26  LQLNRIRITLSSKNVKNLEKVCAD 49


>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
            9515765-9516102,9516191-9516329,9517083-9517152,
            9517201-9517307,9517387-9517437,9517549-9517660,
            9517783-9517869,9517958-9518133,9518479-9518586,
            9518654-9518812,9518888-9518971,9519053-9519258,
            9519565-9519666,9519768-9519877,9519963-9520114,
            9520380-9520548,9520841-9520878,9521963-9522571,
            9523314-9523784,9523786-9523871,9524396-9524906,
            9525388-9525412,9526001-9526051,9526228-9526301,
            9526412-9526534,9526667-9526738,9526924-9527020,
            9527174-9527283
          Length = 1649

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 306  CSASAKKPSSGHELVISA 253
            CS SA  PSSGHE   S+
Sbjct: 1047 CSTSAVVPSSGHEFACSS 1064


>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
          Length = 127

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 294 LMLNNVTNTMHAKMARSLEKLCPD 365
           L LN +  T+ +K  ++LEK+C D
Sbjct: 23  LQLNRIRITLSSKNVKNLEKVCAD 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,126,516
Number of Sequences: 37544
Number of extensions: 148327
Number of successful extensions: 311
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)