Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A18
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.14
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.24
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 0.98
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.3
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 25 5.2
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 25 5.2
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 25 5.2
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 5.2
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 25 6.9
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.9
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 25 6.9
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 25 9.1
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 30.7 bits (66), Expect = 0.14
Identities = 25/89 (28%), Positives = 44/89 (49%)
Frame = -1
Query: 488 YFASSASATPTL*VVSSSSNSFRELGNVFKSASLNSPQRPSREDSCTKATGLRLPFSVTH 309
YF +S+S+TP+ SSSS+S + KS+S + S S + ++ S +
Sbjct: 145 YFITSSSSTPS---SSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSS 201
Query: 308 SQSNPRAWCSILLLRNSATTSSQAFSVCT 222
S S+ ++ S ++S+ SS +F T
Sbjct: 202 SSSSSKSSASPSSSKSSSKFSSSSFITST 230
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.9 bits (64), Expect = 0.24
Identities = 23/88 (26%), Positives = 46/88 (52%)
Frame = -1
Query: 482 ASSASATPTL*VVSSSSNSFRELGNVFKSASLNSPQRPSREDSCTKATGLRLPFSVTHSQ 303
++S+S + VVSSSS+ + S+SL++ PS S + +T L S + S
Sbjct: 204 STSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSS-SSSTSSSLSSSSSSST 262
Query: 302 SNPRAWCSILLLRNSATTSSQAFSVCTV 219
++ + S ++ +S+++SS + T+
Sbjct: 263 ASSSSSSSSIISSSSSSSSSPTSTSSTI 290
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 0.98
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = -1
Query: 476 SASATPTL*VVSSSSNSFRELGNVFKSASLNSPQRPSREDSCTKATGLRLPFSVTHSQSN 297
S TPT+ S+SS S S NS P+ SCT +T +P + S S
Sbjct: 188 STPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTS--IPTGGSSSLST 245
Query: 296 P 294
P
Sbjct: 246 P 246
Score = 27.5 bits (58), Expect = 1.3
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = -1
Query: 476 SASATPTL*VVSSSSNSFRELGNVFKSASLNSPQRPSREDSCTKATGLRLPFSVTHSQSN 297
S TPT+ S+SS S S NS P+ SCT +T + P + S S
Sbjct: 131 STPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIP-PTGGSSSLST 189
Query: 296 P 294
P
Sbjct: 190 P 190
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -1
Query: 476 SASATPTL*VVSSSSNSFRELGNVFKSASLNSPQRPSREDSCTKATGL 333
S TPT+ S+SS S S NS P+ SCT +T +
Sbjct: 244 STPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSI 291
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 2.3
Identities = 30/83 (36%), Positives = 39/83 (46%)
Frame = -1
Query: 479 SSASATPTL*VVSSSSNSFRELGNVFKSASLNSPQRPSREDSCTKATGLRLPFSVTHSQS 300
S+ SATPT SSS +S N S+SL S S +S T AT S T + S
Sbjct: 166 STTSATPTSSATSSSLSS-TAASNSATSSSLAS----SSLNSTTSATATSSSLSST-AAS 219
Query: 299 NPRAWCSILLLRNSATTSSQAFS 231
N S+ ++TTS+ A S
Sbjct: 220 NSATSSSLASSSLNSTTSATATS 242
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +1
Query: 220 TVQTEKACDDVVAELRRRSIEHQALGFDCEWVTENGRRKPVALVQLSSLDGLCGLFRLAD 399
++ ++ D+V + RRR EH+ D +VTE R+ L Q+ + R
Sbjct: 444 SLDVDETSDEVSLQKRRRKNEHK----DAGYVTELYRKNQHLLFQVKEKTNIEAFLR-EQ 498
Query: 400 LKTLPNSLKELLED 441
+ TL +S+ L ++
Sbjct: 499 IITLESSIATLRQE 512
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 222 CFNI*IIENIHCITTCVFMFSHKICY 145
CF+ + +N C+T CV FS ++ +
Sbjct: 385 CFSKMLAKNTVCVTNCVKSFSPRVSH 410
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 364 EKTVAPKPQVYACHFPLPT 308
EKT+A P+ Y H P PT
Sbjct: 238 EKTIADPPEGYLLHDPRPT 256
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 5.2
Identities = 26/95 (27%), Positives = 43/95 (45%)
Frame = -1
Query: 515 STTE*SLYRYFASSASATPTL*VVSSSSNSFRELGNVFKSASLNSPQRPSREDSCTKATG 336
STT S +SS++ T T SSSS+S + S+S +S S S + ++
Sbjct: 134 STTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 193
Query: 335 LRLPFSVTHSQSNPRAWCSILLLRNSATTSSQAFS 231
S + S S+ S +S+++SS + S
Sbjct: 194 SSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSS 228
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 374 RPSREDSCTKATGLRLPFSVTHSQSNPRAWCSIL 273
R R D A G + +V HS+ P +C +L
Sbjct: 144 RCGRTDKGVSAMGQVISLNVRHSERRPIIYCDVL 177
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.0 bits (52), Expect = 6.9
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -1
Query: 482 ASSASATPTL*VVSSSSNSFRELGNVFKSASLNSPQRPSREDSCT 348
+SS+SATP+ SSSS+S + +S +S + SR S T
Sbjct: 134 SSSSSATPS--TTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRT 176
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -2
Query: 382 VHRDHLEKTVAPKPQVYACHFPLPTHSQTQG-LGVQYFFFVI 260
V R+ + + +AP + C P+P + +QG + ++++FF+I
Sbjct: 100 VLRNLMLQVLAPCFVLLWCAVPMPRYEDSQGTVRIRFWFFLI 141
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 434 SNSFRELGNVFKSASLNSPQRPSREDSCT 348
SNS +E + S+ L P+ PS+ DS T
Sbjct: 170 SNSIKEATSPKTSSILTKPRNPSKLDSYT 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,025
Number of Sequences: 5004
Number of extensions: 38866
Number of successful extensions: 132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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