Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A18
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0637 + 30763657-30763858,30765600-30766261 35 0.035
01_06_0636 + 30761733-30762359 34 0.080
01_06_0144 - 26961473-26962072 34 0.080
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 32 0.32
06_03_0769 + 24448483-24448825,24449228-24449305,24450812-244508... 31 0.43
03_02_0804 + 11374219-11374221,11374326-11374473,11374556-113746... 29 1.7
11_06_0481 + 24092574-24093962 29 2.3
07_03_1053 - 23600983-23601550,23601947-23602105,23602192-236023... 29 3.0
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 28 4.0
10_08_0668 + 19737875-19738073,19738157-19738304,19738315-197384... 28 5.3
07_03_0571 - 19602755-19603831 27 7.0
07_03_0175 - 14757109-14757311,14757537-14757615 27 9.2
05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027... 27 9.2
>01_06_0637 + 30763657-30763858,30765600-30766261
Length = 287
Score = 35.1 bits (77), Expect = 0.035
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +1
Query: 226 QTEKACDDVVAELRRRSIEHQALGFDCEWVTENG--RRKPVALVQLSSLDGLCGLFRLAD 399
+ E+ D++V + R ++H +G D EW +G PVA++Q+ + C +F++
Sbjct: 112 EVEEWLDEIV-RIHHRRLDHLIVGLDVEWNPASGFCALGPVAVLQI-CVGRRCLVFQIIH 169
Query: 400 LKTLPNSLKELLEDETTYKVGV 465
+P+ L + L D VGV
Sbjct: 170 ADYVPDQLGDFLGDGRFTFVGV 191
>01_06_0636 + 30761733-30762359
Length = 208
Score = 33.9 bits (74), Expect = 0.080
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 247 DVVAELRRRSIEHQALGFDCEW--VTENGRRKPVALVQLSSLDGLCGLFRLADLKTLPNS 420
D + + RR + + +G D EW T PVA++Q+ + C +F++ +P+S
Sbjct: 39 DEILRIHRRRLNYLVVGLDVEWRPATYYHGPGPVAVLQI-CVGRRCLIFQILHADYVPDS 97
Query: 421 LKELLEDETTYKVGV 465
L + L D VGV
Sbjct: 98 LFDFLADGRFTFVGV 112
>01_06_0144 - 26961473-26962072
Length = 199
Score = 33.9 bits (74), Expect = 0.080
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 292 LGFDCEWVTENG-RRKPVALVQLSSLDGLCGLFRLADLKTLPNSLKELLEDETTYKVGV 465
+G D EW G + PVAL+QL +D C +F+L +P SL+ L VGV
Sbjct: 48 VGLDVEWRPSYGPAQNPVALLQL-CVDRRCLIFQLLYADYVPGSLRRFLAGAADCFVGV 105
>07_01_0353 +
2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 31.9 bits (69), Expect = 0.32
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -1
Query: 443 SSSSNSFRELGNVFKSASLNSPQRPSREDSCTKATGLR 330
SS+S+SFR + +A+LNSP+ PS S TK G R
Sbjct: 156 SSASSSFRRAAS---NATLNSPRSPSVTSSVTKKVGSR 190
>06_03_0769 +
24448483-24448825,24449228-24449305,24450812-24450855,
24451299-24451362,24451543-24451634,24451988-24452234,
24452632-24452775,24452905-24453011,24453096-24453149,
24453221-24453304,24454448-24454611,24455003-24455147
Length = 521
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = -3
Query: 414 RQCLQVSQSEQSTETI*RRQLHQSHRFTPAI 322
R+CL+VS + +++ET+ R +H S R +P+I
Sbjct: 387 RRCLEVSVTLETSETVNPRVIHPSRRSSPSI 417
>03_02_0804 +
11374219-11374221,11374326-11374473,11374556-11374629,
11374736-11375233,11375749-11376093,11376178-11376390,
11376669-11377457,11377686-11377769
Length = 717
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 277 IEHQALGFDCEWVTENGRRKPVALVQLSSLDG 372
++HQ+ C ENG RKP +L +L L+G
Sbjct: 564 VDHQSEHCSCSNPPENGERKPDSLSELVKLNG 595
>11_06_0481 + 24092574-24093962
Length = 462
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 105 LLYNSRCGSWLCVCNIFCEK 164
LL S C WLCVCN+ ++
Sbjct: 141 LLLFSNCSRWLCVCNLATQR 160
>07_03_1053 -
23600983-23601550,23601947-23602105,23602192-23602357,
23602959-23603502,23604506-23604679,23605740-23605985
Length = 618
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 334 KPVALVQLSSLDGLCGLFRLADLKTLPNSLKELLEDET 447
KPV S++ GL G+ R + +T PN + E +T
Sbjct: 484 KPVVHPINSNMQGLGGMMRACEPRTFPNQYSQAAESDT 521
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 181 RNAVDVFNYLNIKTVQTEKACDDVVAELRRRSIEHQALGFDCEWVTENGRRKP 339
++ ++ N+LN++ Q + C +L H + F C W +EN KP
Sbjct: 113 KDKLEHVNHLNLEIAQLGRNCMSARLQLTISKRSHYLVTFAC-WFSENVMNKP 164
>10_08_0668 +
19737875-19738073,19738157-19738304,19738315-19738453,
19738521-19738664,19739502-19739561,19740058-19740190,
19740669-19740865
Length = 339
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 320 SVTHSQSNPRAWCSILLLRNSATTS 246
S++ +Q AW S +LLRN+ TTS
Sbjct: 185 SLSAAQKEDMAWASYVLLRNTNTTS 209
>07_03_0571 - 19602755-19603831
Length = 358
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 334 KPVALVQLSSLDGLCGLFRLADLKTLPNSLKELLEDETTYKV 459
K VALV L+ GLCG F LK ++EL + Y V
Sbjct: 110 KKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTV 151
>07_03_0175 - 14757109-14757311,14757537-14757615
Length = 93
Score = 27.1 bits (57), Expect = 9.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 159 HKICYTRTTNCHSGCCKV 106
+K CY + C S CCK+
Sbjct: 72 YKTCYPNASECWSNCCKL 89
>05_07_0143 +
28000038-28000211,28002217-28002230,28002713-28002788,
28003304-28003865,28004476-28004761,28004848-28005118,
28005478-28005633,28005871-28006368,28006809-28007093
Length = 773
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -2
Query: 307 HSQTQGLGVQYFFFVIQQQHHRKPXXXXXXXXLNN*KHPLH 185
HSQ G G F+ Q+HH+ P N P H
Sbjct: 724 HSQFGGHGYPAFYHSQSQEHHQNPAEGGLNGFQNAQSQPSH 764
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,231,434
Number of Sequences: 37544
Number of extensions: 232738
Number of successful extensions: 496
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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