Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A18
(524 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L76937-1|AAC41981.1| 1432|Homo sapiens protein ( Homo sapiens We... 46 6e-05
AY818673-1|AAX21098.1| 1432|Homo sapiens Werner syndrome helicas... 46 6e-05
AY442327-1|AAR05448.1| 1432|Homo sapiens Werner syndrome protein. 46 6e-05
AF181897-1|AAF06162.1| 1432|Homo sapiens WRN protein. 46 6e-05
AF091214-1|AAC63361.1| 1432|Homo sapiens WRN protein. 46 6e-05
BC001962-1|AAH01962.1| 496|Homo sapiens exonuclease 3'-5' domai... 34 0.35
AK001600-1|BAA91781.1| 496|Homo sapiens protein ( Homo sapiens ... 34 0.35
BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein. 31 1.9
AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens ... 30 5.7
BC000975-1|AAH00975.1| 783|Homo sapiens Unknown (protein for IM... 29 10.0
>L76937-1|AAC41981.1| 1432|Homo sapiens protein ( Homo sapiens
Werner syndrome gene, complete cds. ).
Length = 1432
Score = 46.4 bits (105), Expect = 6e-05
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 241 CDDVVAELRRRSIEHQALGFDCEW--VTENGRRKPVALVQLSSLDGLCGLFRLADLKTLP 414
C + ++ + +GFD EW + G+ VAL+QL + C LF ++ + P
Sbjct: 62 CSFLSEDISMSLSDGDVVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFP 121
Query: 415 NSLKELLEDETTYKVGV 465
LK LLE++ K GV
Sbjct: 122 QGLKMLLENKAVKKAGV 138
>AY818673-1|AAX21098.1| 1432|Homo sapiens Werner syndrome helicase
protein.
Length = 1432
Score = 46.4 bits (105), Expect = 6e-05
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 241 CDDVVAELRRRSIEHQALGFDCEW--VTENGRRKPVALVQLSSLDGLCGLFRLADLKTLP 414
C + ++ + +GFD EW + G+ VAL+QL + C LF ++ + P
Sbjct: 62 CSFLSEDISMSLSDGDVVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFP 121
Query: 415 NSLKELLEDETTYKVGV 465
LK LLE++ K GV
Sbjct: 122 QGLKMLLENKAVKKAGV 138
>AY442327-1|AAR05448.1| 1432|Homo sapiens Werner syndrome protein.
Length = 1432
Score = 46.4 bits (105), Expect = 6e-05
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 241 CDDVVAELRRRSIEHQALGFDCEW--VTENGRRKPVALVQLSSLDGLCGLFRLADLKTLP 414
C + ++ + +GFD EW + G+ VAL+QL + C LF ++ + P
Sbjct: 62 CSFLSEDISMSLSDGDVVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFP 121
Query: 415 NSLKELLEDETTYKVGV 465
LK LLE++ K GV
Sbjct: 122 QGLKMLLENKAVKKAGV 138
>AF181897-1|AAF06162.1| 1432|Homo sapiens WRN protein.
Length = 1432
Score = 46.4 bits (105), Expect = 6e-05
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 241 CDDVVAELRRRSIEHQALGFDCEW--VTENGRRKPVALVQLSSLDGLCGLFRLADLKTLP 414
C + ++ + +GFD EW + G+ VAL+QL + C LF ++ + P
Sbjct: 62 CSFLSEDISMSLSDGDVVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFP 121
Query: 415 NSLKELLEDETTYKVGV 465
LK LLE++ K GV
Sbjct: 122 QGLKMLLENKAVKKAGV 138
>AF091214-1|AAC63361.1| 1432|Homo sapiens WRN protein.
Length = 1432
Score = 46.4 bits (105), Expect = 6e-05
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 241 CDDVVAELRRRSIEHQALGFDCEW--VTENGRRKPVALVQLSSLDGLCGLFRLADLKTLP 414
C + ++ + +GFD EW + G+ VAL+QL + C LF ++ + P
Sbjct: 62 CSFLSEDISMSLSDGDVVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFP 121
Query: 415 NSLKELLEDETTYKVGV 465
LK LLE++ K GV
Sbjct: 122 QGLKMLLENKAVKKAGV 138
>BC001962-1|AAH01962.1| 496|Homo sapiens exonuclease 3'-5'
domain-like 2 protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.35
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +1
Query: 355 LSSLDGLCGLFRLADL----KTLPNSLKELLEDETTYKVGV 465
++S GLC L RL L KTLP +L ++L D T KVGV
Sbjct: 1 MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGV 41
>AK001600-1|BAA91781.1| 496|Homo sapiens protein ( Homo sapiens
cDNA FLJ10738 fis, clone NT2RP3001427, weakly similar to
WERNER SYNDROME HELICASE HOMOLOG. ).
Length = 496
Score = 33.9 bits (74), Expect = 0.35
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +1
Query: 355 LSSLDGLCGLFRLADL----KTLPNSLKELLEDETTYKVGV 465
++S GLC L RL L KTLP +L ++L D T KVGV
Sbjct: 1 MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGV 41
>BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein.
Length = 257
Score = 31.5 bits (68), Expect = 1.9
Identities = 25/83 (30%), Positives = 42/83 (50%)
Frame = -1
Query: 479 SSASATPTL*VVSSSSNSFRELGNVFKSASLNSPQRPSREDSCTKATGLRLPFSVTHSQS 300
SS+S+T + SSSS+S N S+S +SP S S + ++ P S + S S
Sbjct: 84 SSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSS 143
Query: 299 NPRAWCSILLLRNSATTSSQAFS 231
+ + S +S+++SS + S
Sbjct: 144 SSPSSSSSSPSSSSSSSSSSSSS 166
>AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ35107 fis, clone PLACE6006871, moderately
similar to SUPPRESSOR PROTEIN SRP40. ).
Length = 258
Score = 29.9 bits (64), Expect = 5.7
Identities = 24/84 (28%), Positives = 44/84 (52%)
Frame = -1
Query: 482 ASSASATPTL*VVSSSSNSFRELGNVFKSASLNSPQRPSREDSCTKATGLRLPFSVTHSQ 303
+SS++++P+ SSSS+S N S+S +SP S S + ++ P S + S
Sbjct: 85 SSSSTSSPSS-SSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSS 143
Query: 302 SNPRAWCSILLLRNSATTSSQAFS 231
S+ + S +S+++SS + S
Sbjct: 144 SSSPSSSSSSPSSSSSSSSSSSSS 167
>BC000975-1|AAH00975.1| 783|Homo sapiens Unknown (protein for
IMAGE:3448306) protein.
Length = 783
Score = 29.1 bits (62), Expect = 10.0
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = -1
Query: 443 SSSSNSFR--ELGNVFKSASLNSPQRPSREDSCTK 345
+ S+NS+R + GN K A L +P +PS EDS T+
Sbjct: 264 TGSTNSYRMGKEGNYDKLAELPAPAQPSAEDSDTE 298
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,947,808
Number of Sequences: 237096
Number of extensions: 1326145
Number of successful extensions: 2624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2621
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5046825278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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