Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A18
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z34800-4|CAA84323.2|  441|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z36948-2|CAA85410.1|  268|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical
           protein F53H2.3 protein.
          Length = 667

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -1

Query: 482 ASSASATPTL*VVSSSSNSFR-ELGNVFKSASLNSPQRPSR 363
           A+SA+  P L  +SSS +  + E  N F+S SL SP +PS+
Sbjct: 548 ATSANLNPLLPGISSSQSPMKGESWNSFRSCSLFSPIKPSK 588


>Z34800-4|CAA84323.2|  441|Caenorhabditis elegans Hypothetical
           protein F45H7.4 protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 307 EWVTENGRRKPVALVQLSSLDGLCGLFRLADLKTLPNSLKELLE 438
           EW   NG + P+ +  L+    + G+ RL D  ++P     ++E
Sbjct: 69  EWARINGEQVPMEICMLAKCSKVRGVIRLLDWYSIPEGFLIVME 112


>U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical
           protein F32A5.2b protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 367 LEKTVAPKPQVYACHFPLPTHSQTQGLGVQYFFFVIQQQHHRKP 236
           +  T+ P P+V+    P+PT +    +     FFV +Q   R+P
Sbjct: 162 IRPTIRPTPRVFTVTTPIPTFAFVPDIAPVTRFFVQRQPVTRRP 205


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 367 LEKTVAPKPQVYACHFPLPTHSQTQGLGVQYFFFVIQQQHHRKP 236
           +  T+ P P+V+    P+PT +    +     FFV +Q   R+P
Sbjct: 303 IRPTIRPTPRVFTVTTPIPTFAFVPDIAPVTRFFVQRQPVTRRP 346


>Z36948-2|CAA85410.1|  268|Caenorhabditis elegans Hypothetical
           protein D2089.3 protein.
          Length = 268

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 440 SSSNSFRELGNVFKSASLNSPQRPSREDSCTKATGLRLP 324
           +SSNS   L + F   S+N PQ+PS  ++ T  T    P
Sbjct: 118 ASSNS---LPSDFPDISMNEPQQPSTSENATAVTSEEQP 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,055,380
Number of Sequences: 27780
Number of extensions: 223047
Number of successful extensions: 578
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)