Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A18
         (524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.47 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.47 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 207 IIENIHCITTCVFMFSHKICYTRTTNCHSGCCKVNLIF 94
           +++N+H     +  F    C ++T      C KV+L+F
Sbjct: 200 VVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLF 237


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 207 IIENIHCITTCVFMFSHKICYTRTTNCHSGCCKVNLIF 94
           +++N+H     +  F    C ++T      C KV+L+F
Sbjct: 200 VVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLF 237


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/15 (33%), Positives = 13/15 (86%)
 Frame = -2

Query: 178 LRIYVFSQNMLHTHN 134
           ++++V ++++LH HN
Sbjct: 403 IKVFVVNKDILHEHN 417


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 260 SATTSSQAFSVCTVLIFK*LKTSTALRLAYLCFLTKYVTH 141
           S +T +  ++V    +F    TS  L +A +C+ T +VTH
Sbjct: 134 SDSTMAIPYAVTKSAMFFFAATSL-LVVAEVCYFTAHVTH 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,968
Number of Sequences: 438
Number of extensions: 2775
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)