Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A17
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...   146   8e-37
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...   141   4e-35
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.36 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   0.82 
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   0.82 
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    26   2.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   4.4  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   4.4  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   7.7  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    24   7.7  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    24   7.7  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score =  146 bits (355), Expect = 8e-37
 Identities = 73/115 (63%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
 Frame = +3

Query: 57  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 236
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   + V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 237 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYDK-KRPTRKQRKERKNR 398
            +T+FGGG+STGFALIYD+ +  KKFEP +RL R G  +  ++  R+QRK+RKNR
Sbjct: 60  LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNR 114


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score =  141 bits (341), Expect = 4e-35
 Identities = 68/115 (59%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
 Frame = +3

Query: 57  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 236
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK     V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 237 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYDK-KRPTRKQRKERKNR 398
            +T++GGG++TGFALIYD ++  KKFEP +RL R G  +  ++  R+QRK+RKNR
Sbjct: 60  LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNR 114


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 67  PSLIFDYFRDFGVKTHVSPSLV 2
           P L+FDYF D G K HV+P+ V
Sbjct: 53  PDLLFDYFID-GHKIHVNPNAV 73


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 174 EIREKLAKMYKVTPDVVFVFGFKTNFGG 257
           +++E LAK YK+ P  +F   F T+  G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 245 RLETEHENY-VWRHFVHFSELFTDLSFADGRFSWMQDIAYHL 123
           RLE EH    V R+      L    +F D R+ W Q+I+  L
Sbjct: 261 RLEVEHPGEEVLRNNRILGRLMPSRAFGDARYKWSQEISERL 302


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 309 KFEPKHRLARHGLYDKKRPTRKQRKERKN 395
           K+ P  R    G + +KR  RK++ E+KN
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKN 567


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 272 SGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQDI 135
           +G +A  E      HENY      H  E++ D    + R ++  DI
Sbjct: 60  NGMYAGAENHNVENHENYTMVGHDHMEEVYGDDLVNEPRIAYSSDI 105


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 331 SLCFGSNFFAKSSVS*IKANPVDLP 257
           S CF +N F+KSS+  I +N   +P
Sbjct: 766 SFCFINNLFSKSSLKAISSNDSIVP 790


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 348 TGRDERVCVLAQTSLLSLACRRLKQ 274
           +G DER  V      L+  CRRLKQ
Sbjct: 519 SGTDERCLVCLSNFELNDECRRLKQ 543


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 316 SNFFAKSSVS*IKANPVDLPPPKFVLKPNTKTTS 215
           SN+ A S V  +  N +DLPPP   +  + K  S
Sbjct: 135 SNWRADSGVVQVIDNIIDLPPPALEILSSEKDFS 168


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 387 VPYAVCVSASSCHTGRDERVCVLAQTSL 304
           +  A+ V A   H G+D+  C LA+  L
Sbjct: 75  IDVALAVGADGVHIGQDDMDCALARKIL 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,649,439
Number of Sequences: 5004
Number of extensions: 31679
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)