Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A17
(402 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 157 3e-39
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 153 4e-38
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 131 5e-33
01_06_0355 + 28657833-28660665,28660762-28661126 31 0.34
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 28 2.4
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 27 4.2
10_02_0097 + 5283306-5283683,5284618-5284758,5284928-5285074,528... 27 5.6
01_04_0061 + 15555096-15555428,15555768-15555775,15557117-15557495 27 7.3
07_03_0665 + 20470160-20471542 26 9.7
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498... 26 9.7
01_01_0801 - 6241710-6241869,6242522-6242689,6243202-6243269,624... 26 9.7
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 157 bits (381), Expect = 3e-39
Identities = 73/109 (66%), Positives = 90/109 (82%), Gaps = 1/109 (0%)
Frame = +3
Query: 75 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 251
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 252 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYDKKRPTRKQRKERKNR 398
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNR 119
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 153 bits (372), Expect = 4e-38
Identities = 72/109 (66%), Positives = 89/109 (81%), Gaps = 1/109 (0%)
Frame = +3
Query: 75 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 251
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 252 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYDKKRPTRKQRKERKNR 398
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNR 119
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 131 bits (316), Expect(2) = 5e-33
Identities = 60/89 (67%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Frame = +3
Query: 75 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 251
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 252 GGGKSTGFALIYDTLDLAKKFEPKHRLAR 338
GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 26.6 bits (56), Expect(2) = 5e-33
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 339 HGLYDKKRPTRKQRKERKNR 398
+GL K +RKQ KERKNR
Sbjct: 128 NGLATKVEKSRKQMKERKNR 147
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 31.1 bits (67), Expect = 0.34
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 235 PNTKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTICLRANNLLVINLRVRIVA 71
PN S +TL L + + L +GFP CK H + + + LL + L I+A
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLLKVVLIPSILA 724
>06_03_0785 -
24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 28.3 bits (60), Expect = 2.4
Identities = 26/102 (25%), Positives = 50/102 (49%)
Frame = +3
Query: 69 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 248
+++I +F+ R R+++V +L K E R K A+ + +V+ + G N
Sbjct: 169 SSSISIGEFVVGRQKEREELVHQLLEQS----DKPESRSKGARSTSL--EVITIVG---N 219
Query: 249 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYDKKRPTRK 374
G GK+T LIY+ + F+ + + ++DK R T++
Sbjct: 220 GGIGKTTLAQLIYNDKRIEDNFDMRAWVCVSHVFDKVRITKE 261
>06_03_0783 -
24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 27.5 bits (58), Expect = 4.2
Identities = 24/102 (23%), Positives = 47/102 (46%)
Frame = +3
Query: 69 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 248
T++ +F+ R R ++V +L S+TE V+P+V+ + G
Sbjct: 204 TSSFSIDEFVVGRQKERDELVNRLLEQADIPKSRTE------GAISVSPEVITIVG---T 254
Query: 249 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYDKKRPTRK 374
G GK+T LIY+ + ++ + + ++DK R T++
Sbjct: 255 GGIGKTTLTQLIYNDKRIENNYDMRAWICVSHVFDKVRITKE 296
>10_02_0097 +
5283306-5283683,5284618-5284758,5284928-5285074,
5285226-5285378,5285509-5285644,5285740-5285840
Length = 351
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 183 EKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYD 353
E L ++YK+ D ++ T FGG + G A ++ ++ K+ PK ++ G D
Sbjct: 122 ELLTQVYKLPTDRIYA----TYFGGDEKFGLAPDTESKNIWLKYLPKEKVLPFGCKD 174
>01_04_0061 + 15555096-15555428,15555768-15555775,15557117-15557495
Length = 239
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 246 NFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLY-DKKRPTRKQRKERKNR 398
NFGGG + L+Y L+ +++++ G Y +++ ERK +
Sbjct: 100 NFGGGAAVAVGLLYRVLE-ESSHNKRNKISESGAYTSSSNQEIEEKTERKEK 150
>07_03_0665 + 20470160-20471542
Length = 460
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -1
Query: 186 FHGSQFC*RSVFLDARHRIPSACA 115
FHG FC S F HR S+ A
Sbjct: 104 FHGGSFCTESAFCRTYHRYASSLA 127
>07_01_0664 +
4979892-4979931,4980040-4980236,4982340-4982723,
4983499-4983549,4983659-4983741,4983818-4983917,
4984410-4984488,4984957-4985080,4985605-4985711,
4985810-4985938,4987004-4987089,4987200-4987367,
4987477-4987637,4987721-4987752,4987866-4988047,
4988386-4988465,4988885-4988950,4989060-4989349,
4990433-4990540,4991521-4991618,4991680-4991782,
4992269-4992345,4992449-4992520,4992579-4992670,
4992909-4992989,4993290-4993392,4994334-4994492,
4994696-4995085
Length = 1213
Score = 26.2 bits (55), Expect = 9.7
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 1 ARGLETRASLRRNLENNQK*VKEQRRFVRVNL*PTDCWRASRWYAMSCIQENRPSAKLRS 180
A G + SLR N+ K+Q + + N+ P+ C S W+ S + +++ + RS
Sbjct: 438 AVGSDLGPSLREICAANRSDEKQQIKALLENVGPSMCPDHSDWFGCSGLDDHQSPSANRS 497
Query: 181 V 183
V
Sbjct: 498 V 498
>01_01_0801 -
6241710-6241869,6242522-6242689,6243202-6243269,
6243372-6243593,6243676-6243774
Length = 238
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 203 VHFSELFTDLSFADGRFSWMQDIAYHLLARQQSVGHKFTRTNRR 72
V F + T+LSFADG W +A H + V F+ N R
Sbjct: 6 VLFGDSITELSFADG--GWGAALADHFARKADVVLRGFSGYNTR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,719,020
Number of Sequences: 37544
Number of extensions: 203384
Number of successful extensions: 600
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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