Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A17
(402 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal pro... 163 6e-41
Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical pr... 42 1e-04
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 40 7e-04
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chlor... 29 1.2
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chlor... 29 1.2
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo... 29 1.2
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical... 29 1.2
AL032635-4|CAA21601.1| 140|Caenorhabditis elegans Hypothetical ... 27 3.8
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 27 6.7
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 6.7
U97194-6|AAB52451.2| 244|Caenorhabditis elegans Hypothetical pr... 26 8.8
AL132876-6|CAC48121.2| 350|Caenorhabditis elegans Hypothetical ... 26 8.8
AF078788-2|AAC26964.1| 311|Caenorhabditis elegans Hypothetical ... 26 8.8
>AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 24 protein.
Length = 131
Score = 163 bits (395), Expect = 6e-41
Identities = 75/109 (68%), Positives = 90/109 (82%), Gaps = 1/109 (0%)
Frame = +3
Query: 75 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 254
TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V FGF++ G
Sbjct: 6 TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65
Query: 255 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYDK-KRPTRKQRKERKNR 398
GGKS GFAL+YDT+D AKKFEPK+RL R GL K ++P RKQRKERKNR
Sbjct: 66 GGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNR 114
>Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical
protein T26G10.3 protein.
Length = 91
Score = 42.3 bits (95), Expect = 1e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 126 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 224
MV +V+ PG+PT K +IREK+A Y + PD +
Sbjct: 1 MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 39.9 bits (89), Expect = 7e-04
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 270 GFALIYDTLDLAKKFEPKHRLARHGLYDKKRPTRKQRKERKNR 398
GF L+YDT D A K++P+H + H R + +RKE++ R
Sbjct: 54 GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95
>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform a protein.
Length = 1050
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 15 DTCVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 155
D C+ +P+ RK S S A +RT F + + K+M+ D+ PGK
Sbjct: 39 DNCIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83
>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform b protein.
Length = 1085
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 15 DTCVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 155
D C+ +P+ RK S S A +RT F + + K+M+ D+ PGK
Sbjct: 39 DNCIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83
>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
chloride channel CLH-4b protein.
Length = 1084
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 15 DTCVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 155
D C+ +P+ RK S S A +RT F + + K+M+ D+ PGK
Sbjct: 39 DNCIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83
>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
protein Y69A2AR.31 protein.
Length = 1219
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 399 FCSYVPYAVCVSASSCHTGRDERVCVLAQTSLLS 298
F +YVP+A+ S CH ++ C+ Q L+
Sbjct: 537 FVTYVPFALIESIMFCHCAPEDEGCLTQQNQFLA 570
>AL032635-4|CAA21601.1| 140|Caenorhabditis elegans Hypothetical
protein Y51A2A.6 protein.
Length = 140
Score = 27.5 bits (58), Expect = 3.8
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +3
Query: 237 FKTNFGGGKSTGFALI----YDTLDLAKKFEPKHRLARHGLYDKKRPTRKQR 380
F N GGGK+ GF+ + + KK H HG + RPTR R
Sbjct: 21 FVKNNGGGKNHGFSSASSSSSSSSEEGKKHGHGHHHHNHGRPSRPRPTRPPR 72
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 298 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 173
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 298 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 173
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 298 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 173
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 298 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 173
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>U97194-6|AAB52451.2| 244|Caenorhabditis elegans Hypothetical
protein C37A2.6 protein.
Length = 244
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 212 RHFVHFSELFTDLSFADGRFSWMQDI 135
R F+ ++F D FA+ FSW++ I
Sbjct: 156 RKFILLGDMFYDSDFAELLFSWLKKI 181
>AL132876-6|CAC48121.2| 350|Caenorhabditis elegans Hypothetical
protein Y105E8A.6 protein.
Length = 350
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 85 RVNL*PTDCWRASRWYAMSCIQENRPSAKLR 177
R+++ PTD W A+R A+S N+ KL+
Sbjct: 120 RISIDPTDDWLAARLKAVSSDDMNQQLVKLK 150
>AF078788-2|AAC26964.1| 311|Caenorhabditis elegans Hypothetical
protein ZC190.5 protein.
Length = 311
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 114 PTICWS*IYAYESSLFLHSFLI 49
P+I WS + +ES L HSF +
Sbjct: 15 PSIIWSTLTVFESILVFHSFTV 36
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,223,244
Number of Sequences: 27780
Number of extensions: 182346
Number of successful extensions: 551
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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