Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A16
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 30 0.29
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 28 0.90
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 2.1
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 3.6
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 26 3.6
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 4.8
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 25 6.3
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||... 25 6.3
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 8.4
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 29.9 bits (64), Expect = 0.29
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +2
Query: 146 PLVAIGTHVIIQTKNDITIEKTKLELHNRPAVFVSDA-KEIMLEN---WLKMNNYQTFAS 313
P V + + T ND+ IEK E+ N F +A KEI+ +N WLK Y+
Sbjct: 549 PTVNVADDMKDGTNNDVEIEKNSTEIDN--ITFNDEADKEIIEQNRRKWLKSKGYKVAKK 606
Query: 314 K 316
K
Sbjct: 607 K 607
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 28.3 bits (60), Expect = 0.90
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Frame = +2
Query: 149 LVAIGTHVIIQTKNDITIEKTKLELHNRPAVFVSDAKEIMLENWLKMNNYQTFASKTLPD 328
LVAIGTH + T E K E N V ++ +EI N L+ Y+ SK L
Sbjct: 143 LVAIGTHDFSVMEGPFTYEALKPEEIN--FVPLNQTQEINGSNLLEF--YKD--SKHLSR 196
Query: 329 GLHLLTLEPRGDDLLLRIENYLSKGP-----HSTISLDLKSIFNNINILNVKETMLAAN 490
LH++ PR +L S P S IS+D + IF ++ + + + N
Sbjct: 197 YLHIIANSPRYPVILDAKRRVCSLPPIINSEFSKISVDTRDIFIDVTATDKTKLEIVVN 255
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +2
Query: 419 SLDLKSIFNNINILNVKETMLAANQWAGDKRWSWKTENDFVKRFNDAYGNTD 574
S D +S +++ N T + A+ W G +R W+ + V+ ++D G+ +
Sbjct: 883 STDFQSHWSDWEEYNGGLTKVQASNWTGTRRQGWEGHHIHVQYWSDLGGSAN 934
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 162 PIATKG*PSTVSFNASPTPNASSW 91
P+ PST+ FN SP+P A S+
Sbjct: 313 PVLQPPAPSTLQFNPSPSPAAPSY 336
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 110 VGEALNETVLGQPLVAIGTHVIIQTKNDITIEKTKLELHNRPAVFVSDA 256
V + L + L Q G + TKN+ T++ K LH F+ DA
Sbjct: 153 VEKKLKQERLAQNYSENGETNALNTKNESTVQNIKNSLHPNEHSFIRDA 201
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 77 HRRLLHDDAFGVGEALNETVLGQPLVAIGTHVIIQTKNDITIEK 208
H + L D+ G+G A +L + L IG H I +T ND E+
Sbjct: 1312 HMKRLRKDSSGLGRAELVKLLTECLTTIGKH-IEKTVNDTPSEE 1354
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 6.3
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Frame = +2
Query: 152 VAIGTH--VIIQTKNDITIEKTKLELHNRPAVFVSDAKEIMLENWL---KMNNYQTFASK 316
VA+G + +++Q + +EK K E + NW+ + N Q K
Sbjct: 517 VAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARGQWGNWVVQHMVENGQGEDLK 576
Query: 317 TLPDGLHLLTLEPRGDDLLLR-IENYLSKGPHSTISLDLKSIFN 445
+ D L +E D + IE + GP + ISL LK I N
Sbjct: 577 RVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLYLKQITN 620
>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 186
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 191 DITIEKTKLELHNRPAVFVSDAKEIMLENWLKM 289
DI +EK+K + R FV KE+ E W ++
Sbjct: 68 DIDVEKSKYSVTGRYIFFVLYKKELQEEFWPRL 100
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 544 LNEIIFSLPTPSLITGPLIRCEHRFFHI 461
+ E + LP P +ITGP I+ HI
Sbjct: 683 ITEFLDELPAPQVITGPRIQPTKLIDHI 710
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,360
Number of Sequences: 5004
Number of extensions: 44218
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -