Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A16
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 75 4e-14
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 57 1e-08
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 33 0.23
09_02_0621 - 11307417-11307813,11308078-11308246,11308372-113084... 30 1.2
01_02_0092 + 11057604-11057717,11058998-11059531,11060036-110601... 30 1.6
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250... 29 2.1
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 29 2.8
05_07_0238 + 28597399-28598286 28 4.9
09_04_0436 - 17558603-17559265,17559322-17559384 27 8.6
09_02_0625 + 11334418-11334499,11335067-11335164,11335758-113358... 27 8.6
02_04_0620 - 24491055-24491710,24491794-24491986,24492165-244939... 27 8.6
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 27 8.6
>11_05_0014 + 18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 74.9 bits (176), Expect = 4e-14
Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 11/186 (5%)
Frame = +2
Query: 5 EVTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNETVL----GQPLVAIGTHV 172
E+++L DR+ GGAS+ +G+I+LM+HRRLLHDD GV EALNET + LV G +
Sbjct: 757 ELSILVDRSVGGASIKDGQIELMLHRRLLHDDGRGVAEALNETTCFDNQCEGLVIQGKYY 816
Query: 173 I-IQTKNDITIEKTKLELHNRPAVFVSDAKEIMLENWLKMNNYQTFA---SKTLPDGLHL 340
+ I + + + + ++ A++ NW+ + + A + +LPD + L
Sbjct: 817 LKIDPQGEGARWRRTFGQEIYSPLLIAFAEQDG-GNWVNSHVTKFSAMDPAYSLPDNVAL 875
Query: 341 LTLEPRGDDLLLRIENYLSKGPHSTISLDLKSIFNNINILNVKETMLAANQWAG---DKR 511
LTL+ G+ K + S+DLK +F + I+ + ET L+ANQ KR
Sbjct: 876 LTLQ-AGE----------HKDLSALASVDLKRVFPDKKIVKIVETSLSANQERSAMEKKR 924
Query: 512 WSWKTE 529
WK E
Sbjct: 925 LKWKVE 930
>10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 56.8 bits (131), Expect = 1e-08
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 6/184 (3%)
Frame = +2
Query: 2 HEVTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNETVLGQPLVAIGTHVIIQ 181
+E++VL D A G +S+ +G+I++M+HRRL DD GVGE LNE V +
Sbjct: 748 YELSVLVDHAVGASSIQDGQIEVMLHRRLSADDGRGVGEPLNEV------------VCVD 795
Query: 182 TKNDITIEKTKLELHNRPAVFVSDAKEIMLENWLKMNNYQTFASKTLPDGLHLLTLEPRG 361
K D +++ + +N AK +E NY +LPD + ++TL+
Sbjct: 796 QKCDGLVDERSWKSNN-------IAKASTVE-----GNY------SLPDNVAIITLQSLD 837
Query: 362 D-DLLLRIENYLSKGPHSTIS----LDLKSIFNNINILNVKETMLAANQWAGD-KRWSWK 523
D LLR+ + + S ++L+ +F I ++ ET L+ANQ + K+ +W+
Sbjct: 838 DGTTLLRLAHLFQAQEDTQYSVMAKVELRKLFGKRIIKDLTETSLSANQKKSEMKKLNWR 897
Query: 524 TEND 535
+
Sbjct: 898 VTGE 901
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 11 TVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEAL 124
+V + ++ G ASL G +++M+ RRL DD G+G+ +
Sbjct: 940 SVHSKQSLGAASLKNGWLEIMLDRRLTQDDGRGLGQGV 977
>09_02_0621 -
11307417-11307813,11308078-11308246,11308372-11308440,
11308635-11308761,11308985-11309253,11309356-11309522,
11309730-11309801,11310205-11310329
Length = 464
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 11 TVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNETVLGQPLVAIGT-HVIIQTK 187
T ++ AAG ++ E R + D F G L ETV G+P + G HV+ + K
Sbjct: 317 THISVTAAGTIGYIDPEYYFS-SRLTMRSDVFSFGVVLLETVTGEPPIVPGVGHVVQRVK 375
Query: 188 NDIT 199
++
Sbjct: 376 QKVS 379
>01_02_0092 +
11057604-11057717,11058998-11059531,11060036-11060101,
11060201-11060367,11060445-11060592,11060673-11060763,
11060850-11061199,11061284-11061388,11061490-11061789
Length = 624
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 81 LCTISWISPSTKDAPPAARSVNTVTSC 1
L T W P K PP+ R +TVT+C
Sbjct: 104 LRTKEWTKPPCKGTPPSPRESHTVTAC 130
>03_01_0319 -
2499470-2499598,2499681-2499746,2499830-2499937,
2500125-2500259,2500763-2500840,2500994-2501044,
2501805-2501879,2501975-2502037,2503048-2503137,
2503215-2503406,2503498-2503591,2503776-2504279,
2504415-2504614,2504712-2504756,2505023-2505082,
2505476-2505520,2505858-2505941,2506121-2506318,
2506960-2507667
Length = 974
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Frame = +2
Query: 218 ELHNRPAVFVSDAKEIMLENWLKMNNYQTFASKTLPDGLHLLTLEPRGDDLLLRIENYLS 397
EL+ + + V D K + W K++N + + G H L L PRG +L+ +L
Sbjct: 627 ELNMKQEIVVDDEKVM---GWAKVHNNEPLQ---IVCGYHALALPPRGGELVFHPLEHLQ 680
Query: 398 KGPHSTISLDLKSIFNNIN---ILNVKETMLAANQWAGDK 508
+S L L + + I+ + +V++T + A A ++
Sbjct: 681 PVKYSRPGLSLLGLGDTISDNGLTSVEKTEVNARLAAAEE 720
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/41 (21%), Positives = 25/41 (60%)
Frame = +2
Query: 335 HLLTLEPRGDDLLLRIENYLSKGPHSTISLDLKSIFNNINI 457
H++T+ P G+D+ +++ ++ +GP + L + +N+ +
Sbjct: 171 HIITVAP-GEDVTMKVISFSQQGPRAICILSANGVISNVTL 210
>05_07_0238 + 28597399-28598286
Length = 295
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = -3
Query: 138 STVSFNASPTPNASSWSNLLCTISWISPSTKDAPPAA 28
STV+ + S +P++SS ++ CT+S +PS++ A P A
Sbjct: 33 STVTTSPS-SPSSSSTGSVDCTLSLGTPSSRRAEPVA 68
>09_04_0436 - 17558603-17559265,17559322-17559384
Length = 241
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -3
Query: 141 PSTVSFNASPTPNASSWSNLLCTISW-ISPSTKDAPP---AARSVNTVTSC 1
PST S +A+P PNAS+ ++SW +P P A+R+V T C
Sbjct: 162 PSTTSSSATPPPNASATPT--PSLSWRTTPPPCQRHPSSRASRAVRTTPPC 210
>09_02_0625 +
11334418-11334499,11335067-11335164,11335758-11335831,
11335996-11336598,11336692-11337185,11338035-11338170,
11338417-11338488,11338581-11338652,11339078-11339226,
11340129-11340364,11340567-11340693,11341011-11341079,
11341172-11341361,11341465-11341857,11342084-11342195
Length = 968
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 17 LTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNETVLGQ-PLVAIGTHVIIQTKND 193
+T AAG ++ E L R + D F G L E V G+ P++ H++ + K
Sbjct: 787 ITATAAGTLGYIDPEYCLS-GRLTISSDVFSFGVVLLEIVTGEPPIIPTNGHIVQRIKEK 845
Query: 194 ITI 202
+ +
Sbjct: 846 VNM 848
>02_04_0620 -
24491055-24491710,24491794-24491986,24492165-24493991,
24494245-24494304,24494808-24494916,24496393-24496522,
24498740-24498848
Length = 1027
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 138 STVSFNASPTPNASSWSNLLCTISWISPSTKDAPPAAR 25
ST S NA +S+ + C++SW +++ A P R
Sbjct: 803 STTSKNAKAVSRSSAIEAVACSLSWDDTTSESALPGTR 840
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 114 PTPNASSWSNLLCTISWISPSTK 46
PT S W CT SW+S ++K
Sbjct: 478 PTMKTSDWYTKSCTYSWVSLNSK 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,442,774
Number of Sequences: 37544
Number of extensions: 274752
Number of successful extensions: 850
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -