Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A16
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    29   0.026
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   1.7  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   1.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.0  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    22   5.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.3  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 0.026
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 94  RRRIWSRRGVERDRARSTFSCYRNTCNYSNKE*YYHRKN 210
           + R   RR  ER +     S   N+CNYSN   YY+  N
Sbjct: 286 KERSRDRRERERSKEPKIISSLSNSCNYSNN--YYNNNN 322


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 109 SRRGVERDRARSTFSCYRNTCNYSNKE*YYHRK 207
           SR   ER+R++ T     N  NY N    Y+ K
Sbjct: 289 SRDRTERERSKETKIISSNNYNYKNYNNNYNSK 321


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 109 SRRGVERDRARSTFSCYRNTCNYSNKE*YYHRK 207
           SR   ER+R++ T     N  NY N    Y+ K
Sbjct: 300 SRDRTERERSKETKIISSNNYNYKNYNNNYNSK 332


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 323 PDGLHLLTLEPRGDDLLLRIENYLSKGPHSTISLDLKSIFN 445
           PD  HL+TL+ +   + L ++   S G     + D+K+  N
Sbjct: 750 PDSRHLVTLDKQETGVTLVVQEISSDG--LKFAFDVKTTLN 788


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 360 PRGSRVSRCKPSGNVL 313
           PRGS     +PSG++L
Sbjct: 8   PRGSSAEEQQPSGDIL 23


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 360 PRGSRVSRCKPSGNVL 313
           PRGS     +PSG++L
Sbjct: 8   PRGSSAEEQQPSGDIL 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,528
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)