Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A15
(480 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 217 9e-58
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 208 4e-55
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 115 3e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 99 4e-22
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 31 0.068
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 3.4
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 4.5
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 5.9
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 25 5.9
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi... 25 5.9
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 25 5.9
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 5.9
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 7.8
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 25 7.8
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 217 bits (529), Expect = 9e-58
Identities = 92/132 (69%), Positives = 111/132 (84%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGSACWELYCLEHGIQPDGQMPTDKTLGGGDDSFNTFFSETGAGK 264
MRE IS+H+GQAG QIG+ACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 265 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGNEIVDVVLD 444
+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+G E+VD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 445 RIRKLADQCTGL 480
+IR++AD C+GL
Sbjct: 121 KIRRIADNCSGL 132
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 208 bits (507), Expect = 4e-55
Identities = 93/137 (67%), Positives = 113/137 (82%), Gaps = 5/137 (3%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGSACWELYCLEHGIQPDGQMPTD-----KTLGGGDDSFNTFFSE 249
MRE ISVH+GQAGVQIG+ACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 250 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGNEIV 429
TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+G E++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 430 DVVLDRIRKLADQCTGL 480
D VL+RIR++AD C+GL
Sbjct: 120 DSVLERIRRMADNCSGL 136
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 115 bits (277), Expect = 3e-27
Identities = 55/132 (41%), Positives = 77/132 (58%)
Frame = +1
Query: 85 MRECISVHIGQAGVQIGSACWELYCLEHGIQPDGQMPTDKTLGGGDDSFNTFFSETGAGK 264
MRE + + GQ G Q+G+A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 265 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGNEIVDVVLD 444
+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 445 RIRKLADQCTGL 480
+R+ A+ C L
Sbjct: 119 VVRREAEACDAL 130
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 98.7 bits (235), Expect = 4e-22
Identities = 51/128 (39%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Frame = +1
Query: 88 RECISVHIGQAGVQIGSACWELYCLEHGIQPDGQMPTDKTLGGGDDSFNTFFSETGAGKH 267
RE I++ GQ G QIGS W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 268 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGNEIVDVVL 441
+PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 442 DRIRKLAD 465
D I + AD
Sbjct: 120 DMIDREAD 127
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 31.5 bits (68), Expect = 0.068
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = +2
Query: 92 NASQYTSGKPEFRSAQHAGSCTASSMVSSLMDRCPRTRRWAAVM-----TPSIHSLVRPV 256
N+ + + K RS Q +V +L + P T +W+ V+ +P I ++ + V
Sbjct: 113 NSLEIATNKKLVRSIQQDAQEFLQHLVETLELQKPHTYKWSKVLSFPVDSPFIGTMEQKV 172
Query: 257 LVNTCLGLCLSTSNLLSL-MRFVPEHTGN 340
CL + +S S S+ + PE++GN
Sbjct: 173 QCCQCLAISISYSTATSIQLCLPPEYSGN 201
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 3.4
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 80 PK*GNASQYTSGKPEFRSAQHAGSCTASSMVSSLMDRCPRTRRWAAVMTPS 232
PK A++ SGKP +SAQ S T + + R + + + TPS
Sbjct: 1221 PKKQTANRRQSGKPNVKSAQKIESATRTPSPAISESRKKPSSKDTKIETPS 1271
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 4.5
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 89 GNASQYTSGKPEFRSAQHAGSCTASSMVSSLMDRCPRT 202
GNAS TS K H + ASS +SL P T
Sbjct: 267 GNASSSTSAKRRRPDHNHTSTLDASSSNTSLASTGPMT 304
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.0 bits (52), Expect = 5.9
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 433 RQRSHCRWC 407
R+R HCRWC
Sbjct: 44 RRRHHCRWC 52
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 5.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +1
Query: 358 LITGKEDAANNYARGHYT------IGNEIVDVVLDRIRKLAD 465
LI K+D N Y R Y+ + NE V+DR+R +AD
Sbjct: 404 LIDVKKDFYNIYGRTFYSRYDYEELENEAAGKVMDRMRAIAD 445
>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
Spa1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 445 YRGQRQRSHCRWCSDHERSCWLRP 374
++ QR+R RW SD R+C +P
Sbjct: 79 FKQQRRRHVPRWISDSFRTCLPKP 102
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 215 AVMTPSIHSLVRPVLVNTC 271
A+ +P S+ +PVLVN C
Sbjct: 335 AICSPEFASITQPVLVNEC 353
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 5.9
Identities = 7/24 (29%), Positives = 17/24 (70%)
Frame = +1
Query: 388 NYARGHYTIGNEIVDVVLDRIRKL 459
N+ + HY++ E+ DV++ ++ +L
Sbjct: 64 NHKKPHYSVETEVKDVIISKVVEL 87
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 24.6 bits (51), Expect = 7.8
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = -2
Query: 284 NTALGTCLPAPVSLKNVLKESSPPPSVLSVGICPSGWIPCSRQYSSQHAEP 132
N A C PVSL +PP VL + C+ QYS P
Sbjct: 24 NQATAECKVPPVSLSQGFFNYNPPKFVLDAAKKSIDEVACN-QYSHTRGRP 73
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 248 RPVLVNTCLGLCLSTSNLLSLMRFVPE 328
RP L+NT C ST L SL R +
Sbjct: 264 RPTLLNTYGNRCSSTDTLSSLSRLTSQ 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,493
Number of Sequences: 5004
Number of extensions: 43916
Number of successful extensions: 144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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