Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A13
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   143   8e-35
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   127   4e-30
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   118   2e-27
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    98   3e-21
AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.    31   0.51 
AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.    31   0.51 
AC025726-22|AAN73851.2|  512|Caenorhabditis elegans Abnormal cel...    31   0.51 
AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cel...    31   0.51 
Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical pr...    27   6.3  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  143 bits (346), Expect = 8e-35
 Identities = 65/118 (55%), Positives = 81/118 (68%)
 Frame = +3

Query: 174 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 353
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91

Query: 354 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVE 527
           +A+  FK+L+KYRPE+                    E   KRPNT+R G NT+T+LVE
Sbjct: 92  SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  127 bits (307), Expect = 4e-30
 Identities = 64/118 (54%), Positives = 80/118 (67%)
 Frame = +3

Query: 174 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 353
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91

Query: 354 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVE 527
           +A+  FK+L+KYRPE+                        KRPNT+R G NT+T+LVE
Sbjct: 92  SARQAFKLLDKYRPESTEVT--------------------KRPNTVRHGVNTITRLVE 129


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  118 bits (285), Expect = 2e-27
 Identities = 51/76 (67%), Positives = 64/76 (84%)
 Frame = +3

Query: 174 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 353
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194

Query: 354 TAKGLFKILEKYRPET 401
           +A+  FK+L+KYRPE+
Sbjct: 195 SARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 42/58 (72%), Positives = 50/58 (86%)
 Frame = +3

Query: 174 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 347
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.
          Length = 691

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +2

Query: 104 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 283
           D ++    +T G ES  QE+               P   A++ S P +   E+   P S 
Sbjct: 31  DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 88

Query: 284 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 379
           G   AS+Q++ A+    P++  +   +  QD+
Sbjct: 89  GAPDASAQASEASDASAPEVPGSTEAQDAQDV 120


>AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.
          Length = 728

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +2

Query: 104 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 283
           D ++    +T G ES  QE+               P   A++ S P +   E+   P S 
Sbjct: 68  DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125

Query: 284 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 379
           G   AS+Q++ A+    P++  +   +  QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157


>AC025726-22|AAN73851.2|  512|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform b protein.
          Length = 512

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +2

Query: 104 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 283
           D ++    +T G ES  QE+               P   A++ S P +   E+   P S 
Sbjct: 68  DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125

Query: 284 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 379
           G   AS+Q++ A+    P++  +   +  QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157


>AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform a protein.
          Length = 728

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +2

Query: 104 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 283
           D ++    +T G ES  QE+               P   A++ S P +   E+   P S 
Sbjct: 68  DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125

Query: 284 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 379
           G   AS+Q++ A+    P++  +   +  QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157


>Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical
           protein W05B10.5 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 229 LVGWMSWPIAKF--FVLFSNRGFTIF 158
           LVGW +W I  F   +L SNR F +F
Sbjct: 97  LVGWFAWCIGPFSQVLLTSNRIFAVF 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,915,045
Number of Sequences: 27780
Number of extensions: 197464
Number of successful extensions: 450
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)