Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A12
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1361 - 36663859-36663985,36664353-36664543,36664746-366650...    29   2.0  

>01_06_1361 -
           36663859-36663985,36664353-36664543,36664746-36665009,
           36665215-36665373,36665476-36665679,36665765-36665983,
           36666191-36666322,36666406-36666523,36666670-36666854,
           36667263-36667355,36667819-36668008,36668500-36668585,
           36668671-36668847,36669141-36669320,36669423-36669623
          Length = 841

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +1

Query: 265 NLCIIKVHTIHGTEP--SNIIFQGLF*NYIT 351
           NLC++  HT++G     SNI+ + LF +Y++
Sbjct: 446 NLCVVSAHTVNGVAELHSNILKEELFADYLS 476


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,902,396
Number of Sequences: 37544
Number of extensions: 180126
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)