Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A12
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82280-8|CAB05269.3|  280|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z75711-4|CAB00030.1|  134|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81570-5|CAB04605.2|  321|Caenorhabditis elegans Hypothetical pr...    29   1.8  
X59156-3|CAA41873.1|   85|Caenorhabditis elegans transposase pro...    28   4.1  
Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical p...    27   9.5  
AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z82280-8|CAB05269.3|  280|Caenorhabditis elegans Hypothetical
           protein R05A10.8 protein.
          Length = 280

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 130 PNSASIHPFILIQIKKTIINLIKTDLL*FFSINKNTQNFCRITTLNLCIIKVHTIH 297
           P   +IH F+++   K +  L+  +++ FF I KN+QN C     N  I   + IH
Sbjct: 4   PEPCNIHQFLVV---KFLFILLSLNVVTFFIIAKNSQNECGAEVFN--IYNANAIH 54


>Z75711-4|CAB00030.1|  134|Caenorhabditis elegans Hypothetical
           protein K02B12.6 protein.
          Length = 134

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 81  YRTYNPRSNIGYGVLTTKFSLYSPVHINSNKENY 182
           Y +Y P+ + G+    TK++ Y+P +  S+++NY
Sbjct: 81  YHSYMPKYHGGHNDYYTKYNQYTPYYGGSHQQNY 114


>Z81570-5|CAB04605.2|  321|Caenorhabditis elegans Hypothetical
           protein K12G11.5 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
 Frame = +3

Query: 267 FMY--YQSTYDSRDRTIKYYFPRIVLKL--YHATINVMNI*NASR----AAGTQLVTNKC 422
           +MY  +QS Y S +R I  YFP    KL  Y AT  +  +  A R    +  T L T+K 
Sbjct: 100 YMYNEFQSIYISINRFIAIYFPHHYNKLCGYTATAFISTLLYADRLRNISIETYLRTSKQ 159

Query: 423 RSIIYTS 443
           + IIY+S
Sbjct: 160 QFIIYSS 166


>X59156-3|CAA41873.1|   85|Caenorhabditis elegans transposase
           protein.
          Length = 85

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 85  ELTIHGLTLATESSLPNSASIHPFILIQIKKTIINLIKTDLL*FF 219
           +L+       ++SS   + S+H  +L  +KK+++NL +  L+ FF
Sbjct: 10  QLSFRRRPAGSKSSCVGTTSVHDELLQLVKKSLMNLPRKSLITFF 54


>Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical
            protein Y37A1C.1c protein.
          Length = 1210

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 341  IISRHYKRHEYIKREQSRRHTASNK 415
            +I    KRH  ++R  SRRHT   K
Sbjct: 989  VIDEQEKRHFSLRRRGSRRHTVEQK 1013


>AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical
            protein Y37A1C.1c protein.
          Length = 1210

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 341  IISRHYKRHEYIKREQSRRHTASNK 415
            +I    KRH  ++R  SRRHT   K
Sbjct: 989  VIDEQEKRHFSLRRRGSRRHTVEQK 1013


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,766,758
Number of Sequences: 27780
Number of extensions: 207293
Number of successful extensions: 477
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)