Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A11
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 175 4e-45
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 175 4e-45
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 34 0.011
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 2.3
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 26 3.0
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 26 3.0
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy... 25 5.2
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 25 5.2
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 6.9
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 25 9.1
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 9.1
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 9.1
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 9.1
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 175 bits (425), Expect = 4e-45
Identities = 78/120 (65%), Positives = 95/120 (79%)
Frame = +2
Query: 83 IARGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQ 262
I + K R K+VGLGFKTP EA+ G Y+DKKCPF G VSIRGRILTG V KM
Sbjct: 19 IFQNAKKGAGRRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMH 78
Query: 263 RTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVL 442
RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR + GD+VT+G+CRPLSKTVRFNVL
Sbjct: 79 RTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVL 137
Score = 28.3 bits (60), Expect = 0.74
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 40 QTEKAFQKQATVFLNRKGGHEKEGYE 117
Q+E+AFQKQ +F N K G + Y+
Sbjct: 8 QSERAFQKQPHIFQNAKKGAGRRWYK 33
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 175 bits (425), Expect = 4e-45
Identities = 78/120 (65%), Positives = 95/120 (79%)
Frame = +2
Query: 83 IARGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQ 262
I + K R K+VGLGFKTP EA+ G Y+DKKCPF G VSIRGRILTG V KM
Sbjct: 19 IFQNAKKGAGRRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMH 78
Query: 263 RTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVL 442
RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR + GD+VT+G+CRPLSKTVRFNVL
Sbjct: 79 RTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVL 137
Score = 28.3 bits (60), Expect = 0.74
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 40 QTEKAFQKQATVFLNRKGGHEKEGYE 117
Q+E+AFQKQ +F N K G + Y+
Sbjct: 8 QSERAFQKQPHIFQNAKKGAGRRWYK 33
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 34.3 bits (75), Expect = 0.011
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 236 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 415
G+V M +T +R + P ++ +++N V + +GD VTI CRP
Sbjct: 7 GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63
Query: 416 SKTVRFNVL 442
S T RF ++
Sbjct: 64 SATKRFEII 72
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 388 DVSDFHVPEARR*MNRHVPVSL 323
DV+ + VPEARR RH PV L
Sbjct: 481 DVNYYPVPEARRSNMRHRPVGL 502
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 517 FFFTYNEVYLELFERFFGTFAFRDL 443
FF N Y+EL + FG++AF L
Sbjct: 129 FFSALNGHYVELIQTTFGSYAFEKL 153
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = -2
Query: 486 NFLKDFLEPLPLET---FSTLNLTVLESGLH 403
N LKD +EPL L T F++L +V +S LH
Sbjct: 323 NVLKDSIEPLLLPTVNKFASLGWSVDDSNLH 353
>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 74 CSSIARGGMKRKDMRHSKNVGLGFKTPRE 160
C+ IA+ +K K + V LGF TP +
Sbjct: 438 CAKIAKTALKNKSTLKHEFVTLGFGTPEQ 466
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 31 WADQTEKAFQKQATVFLNRKGGHEKEGYETF 123
WADQ TV ++ H +G+ETF
Sbjct: 192 WADQGILMLNASLTVRAHQAASHSGKGWETF 222
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 371 VEIGDIVTIGECRPLSKTVRFNVL 442
V +GDIVTI C + R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 373 HVPEARR*MNRHVPVSLLKSVVFRQVMEII 284
H PE NR ++++K+V+F+Q+ E++
Sbjct: 49 HPPEEIARRNRVPQMAVVKAVLFQQLCEVV 78
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 24.6 bits (51), Expect = 9.1
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Frame = -1
Query: 343 RHVPVSLLKSVVFRQVMEIIAPDNNCSLHF-------HFLNNACQDTASDG 212
+HV + L FR I DN +LHF H ++ QDT SDG
Sbjct: 699 KHVDFTYLDDEKFRAT---IHDDNTFTLHFFNRHSPFHLISQFLQDTFSDG 746
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 435 LNLTVLESGLHSPIVTMSPISTSLKQGDR*TDMFLCRFSN 316
L+ + + L SP+ T++ + L G D+FL FSN
Sbjct: 6 LHESAIPKELDSPVTTIALYNNHLYFGTEGGDVFLYNFSN 45
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 93 PLAIEEHRRLFLKRFLCLIRPILPSC 16
P+AI L L F C++ P+L C
Sbjct: 1578 PIAISTAALLILLMFSCMLGPLLRKC 1603
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,949
Number of Sequences: 5004
Number of extensions: 47819
Number of successful extensions: 146
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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