Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A11
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 172 2e-43
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 163 6e-41
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 159 1e-39
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 159 1e-39
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 147 4e-36
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 108 2e-24
08_02_0383 - 16539472-16539633,16543044-16543205 44 1e-04
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 37 0.011
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 2.3
01_05_0586 + 23443371-23444645 29 2.3
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 29 3.0
11_06_0289 - 21969248-21973516 28 5.3
11_06_0185 + 21018045-21022307 28 5.3
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 28 5.3
06_01_0462 - 3285667-3288123 28 5.3
01_05_0509 + 22811184-22812038,22813493-22814020 28 5.3
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 27 9.2
04_03_0830 - 20125827-20125913,20126262-20126357,20126974-201270... 27 9.2
04_03_0631 - 18190195-18190686,18190866-18191066 27 9.2
03_06_0410 - 33728507-33729415,33729511-33729654,33730054-337309... 27 9.2
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 172 bits (418), Expect = 2e-43
Identities = 76/109 (69%), Positives = 90/109 (82%)
Frame = +2
Query: 116 RHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 295
R KN+GLGFKTPREA+EGTYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH
Sbjct: 25 RFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLH 84
Query: 296 YLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVL 442
++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNV+
Sbjct: 85 FVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVI 132
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 163 bits (397), Expect = 6e-41
Identities = 77/116 (66%), Positives = 90/116 (77%), Gaps = 7/116 (6%)
Frame = +2
Query: 116 RHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 295
R KN+GLGFKTPREA+EGTYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH
Sbjct: 34 RFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLH 93
Query: 296 YLPKYNR-------FEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVL 442
++ KY R +EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVL
Sbjct: 94 FVKKYQRQVNLVAGYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVL 148
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 159 bits (387), Expect = 1e-39
Identities = 76/118 (64%), Positives = 90/118 (76%), Gaps = 9/118 (7%)
Frame = +2
Query: 116 RHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 295
R K++GLGFKTPREA+EGTYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH
Sbjct: 34 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLH 93
Query: 296 YLPKYN---------RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVL 442
++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVL
Sbjct: 94 FVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVL 150
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +1
Query: 34 ADQTEKAFQKQATVFL-NRKGGHEKE 108
A+QTEKAF KQ VFL ++K G K+
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKK 27
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 159 bits (387), Expect = 1e-39
Identities = 76/118 (64%), Positives = 90/118 (76%), Gaps = 9/118 (7%)
Frame = +2
Query: 116 RHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 295
R K++GLGFKTPREA+EGTYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH
Sbjct: 34 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLH 93
Query: 296 YLPKYN---------RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVL 442
++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVL
Sbjct: 94 FVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVL 150
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +1
Query: 34 ADQTEKAFQKQATVFL-NRKGGHEKE 108
A+QTEKAF KQ VFL ++K G K+
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKK 27
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 147 bits (357), Expect = 4e-36
Identities = 76/133 (57%), Positives = 90/133 (67%), Gaps = 24/133 (18%)
Frame = +2
Query: 116 RHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 295
R K++GLGFKTPREA+EGTYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH
Sbjct: 34 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLH 93
Query: 296 YLPKYN------------------------RFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 403
++ KY R+EKRH N+ H+SPCFR V+ GD V IG+
Sbjct: 94 FVKKYQRQVNNYGFYLCFFSFFFPISDLGCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQ 152
Query: 404 CRPLSKTVRFNVL 442
CRPLSKTVRFNVL
Sbjct: 153 CRPLSKTVRFNVL 165
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +1
Query: 34 ADQTEKAFQKQATVFL-NRKGGHEKE 108
A+QTEKAF KQ VFL ++K G K+
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKK 27
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 108 bits (260), Expect = 2e-24
Identities = 46/67 (68%), Positives = 55/67 (82%)
Frame = +2
Query: 116 RHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 295
R K++GLGFKTPREA+EGTYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH
Sbjct: 34 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLH 93
Query: 296 YLPKYNR 316
++ KY R
Sbjct: 94 FVKKYQR 100
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +1
Query: 34 ADQTEKAFQKQATVFL-NRKGGHEKE 108
A+QTEKAF KQ VFL ++K G K+
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKK 27
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/64 (37%), Positives = 33/64 (51%)
Frame = +2
Query: 230 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 409
+ G+V KMQ+++V+ D L + YNR+ KR H D IGD V + R
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAHDET--EDCNIGDRVKLDPSR 61
Query: 410 PLSK 421
PLSK
Sbjct: 62 PLSK 65
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 36.7 bits (81), Expect = 0.011
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +2
Query: 230 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 409
LTG V K +T+ + L PKY R E+ + H P ++GD+V + R
Sbjct: 972 LTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAH-DPD-NQFKVGDVVELRRSR 1029
Query: 410 PLSKTVRF 433
P+SKT F
Sbjct: 1030 PISKTKHF 1037
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 164 VEGTYIDKKCPFTGNVSIRGRILTGVVQKM-KMQRTIVIRRDYLHYLPKY 310
V GT PFTG++S G + + KM + +V +DYLH K+
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>01_05_0586 + 23443371-23444645
Length = 424
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 276 SGAIISITCLNTTDLRSDTGTCLFIYRLASGTWKS 380
+GA S TCLN T+ S G Y ++ G W S
Sbjct: 35 TGASFSRTCLNLTNAVSGIGVLSMPYAVSQGGWLS 69
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 95 GMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGR 226
G ++RH+ ++G E T +DK+ P +G S+ GR
Sbjct: 121 GAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGR 164
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 242 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 376
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1251 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1295
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 242 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 376
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1249 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1293
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 105 LFMPPLAIEEHRRLFLKRFLCLIRPILPSCRIPAA 1
L M P + R LF+K+F C P+ +CRI A+
Sbjct: 556 LLMAPTNKKASRELFIKKFSCK-SPVYHNCRIYAS 589
>06_01_0462 - 3285667-3288123
Length = 818
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 138 RPTFLECLISFLFMPPLAIEEHRRLFLKR 52
R ++ I FL MP +A+ HR+ FL R
Sbjct: 2 RGVYIFTTIFFLLMPTIALANHRKPFLAR 30
>01_05_0509 + 22811184-22812038,22813493-22814020
Length = 460
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 273 LSGAIISITCLNTTDLRSDTGTCLFIYRLASGTWKSETSSQLASA 407
++GA +CLN +++ S G Y L+ G W S T + A
Sbjct: 65 MTGASFGRSCLNLSNIISGIGMLSVPYALSQGGWLSLTLFTMVGA 109
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 226 YPDRRCSENENAANNCYQARLSPLPA*IQQI*EATQEHVCSSIAL 360
Y DRR ++E A Y+A+LS + Q + E T + +S A+
Sbjct: 205 YLDRRPDQSEVVATQDYEAQLSQISEMGQSVAEGTSDDPSASAAV 249
>04_03_0830 -
20125827-20125913,20126262-20126357,20126974-20127053,
20127124-20127220,20127457-20127544,20128491-20128576,
20129358-20130530
Length = 568
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 178 VCAFNGLTGCLET*TNIL-RMSHILPFHAPPCD*GTPSPVSETLSLSDPPNIALVPNSCS 2
+CAF CL+ +L S PFH PP + +P S + S ++ L P++ +
Sbjct: 51 ICAF-----CLQEKLGMLVSSSKSSPFHPPPASASSSTPTSHVAAESSSSSLPLHPSAAA 105
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 315 DLRSDTGTCLFIYR-LASGTWKSETSSQLASA 407
D +S TGTC F+ R L S ++K + S L++A
Sbjct: 87 DRKSTTGTCQFLGRSLVSWSFKKQNSIALSTA 118
>03_06_0410 -
33728507-33729415,33729511-33729654,33730054-33730920,
33731371-33731913
Length = 820
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 235 CQDTASDGHVTREWTFLINVCAFNGLTGCLET*TNILRMSHILPFHAP 92
C + + HV W+ + CAF GL E R I+PFHAP
Sbjct: 357 CLNYLTSPHVVI-WSAVTASCAFPGLFEAQELMAKN-RFGEIVPFHAP 402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,875,962
Number of Sequences: 37544
Number of extensions: 339147
Number of successful extensions: 791
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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