Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A11
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   183   6e-47
AL031629-5|CAA20979.1|   99|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  183 bits (446), Expect = 6e-47
 Identities = 82/113 (72%), Positives = 94/113 (83%)
 Frame = +2

Query: 104 RKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRR 283
           +K  R+ + VGLGFK PR+AVEGTYIDKKCP+ GNV IRG ILTGVV K KM RTIV+RR
Sbjct: 28  KKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAGNVPIRGMILTGVVLKNKMTRTIVVRR 87

Query: 284 DYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVL 442
           DYLHY+ KY R+EKRH+N+  H SP FRD+  GD+VTIGECRPLSKTVRFNVL
Sbjct: 88  DYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGDLVTIGECRPLSKTVRFNVL 140



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 34 ADQTEKAFQKQATVFLNRK 90
          ++QTE+AF KQ TV LN K
Sbjct: 2  SEQTERAFLKQPTVNLNNK 20


>AL031629-5|CAA20979.1|   99|Caenorhabditis elegans Hypothetical
           protein Y106G6D.6 protein.
          Length = 99

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 243 FRK*KCSEQLLSGAIISITCLNTTDL 320
           F   KC EQ +SG +++  C NT DL
Sbjct: 45  FHANKCFEQNVSGQLLTFCCCNTDDL 70


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 285 SRLITIVRCIFIF*TTPVRIRPRMDTLPVNGHFLSMYVPSTASRGVLK 142
           ++ +T  +   +  TTPV++ P   TLP     L++   +TA+R   K
Sbjct: 341 TKRLTTTKATTVLTTTPVKVTPATTTLPTTS--LALETTTTATRTTAK 386


>Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical
           protein R08A2.4 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 337 VPVSLLKSVVFRQVMEIIAPDNNCSLHFHFLNNACQD 227
           + +SLL+ +   QV+  I P+   +L+FH  +  C D
Sbjct: 148 IDISLLEYLQAVQVLTYIHPETLKTLNFHIYSEKCND 184


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 277 DNNCSLHFHFLNNACQDTASD 215
           DN C L+   +NN CQ T S+
Sbjct: 169 DNTCGLNQRCVNNMCQSTGSN 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,537,595
Number of Sequences: 27780
Number of extensions: 286112
Number of successful extensions: 717
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)