Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A10
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 272 2e-74
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 164 6e-42
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 157 1e-39
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 111 5e-26
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 2.3
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 27 2.3
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 26 3.1
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 26 4.1
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 9.5
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz... 25 9.5
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 9.5
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 9.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 272 bits (668), Expect = 2e-74
Identities = 125/169 (73%), Positives = 146/169 (86%)
Frame = +3
Query: 9 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVS 188
P+PK SDTVVEPYNA LS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLVS
Sbjct: 171 PAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVS 230
Query: 189 LTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELT 368
M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFFM GFAPL + GS ++A++VPELT
Sbjct: 231 AVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELT 290
Query: 369 QQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLSIQNKNSS 515
QQMFDA NMM A DPRHGRYLTVAA+FRG++SMKEVDEQ+ S+Q KNS+
Sbjct: 291 QQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSA 339
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 164 bits (399), Expect = 6e-42
Identities = 70/168 (41%), Positives = 110/168 (65%)
Frame = +3
Query: 9 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVS 188
P+P+VS +VVEPYN+VL+ H ++N+D T+ +DNEA YDIC R L + PTY +LN L++
Sbjct: 177 PAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIA 236
Query: 189 LTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELT 368
+S +T LRF G LN DL + N+VP+PR+HF + ++P+ S + + +V E+T
Sbjct: 237 QVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEIT 296
Query: 369 QQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLSIQNKNS 512
Q F+ N M CDPR GRY+ ++RG + ++V + SI+++ +
Sbjct: 297 NQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRT 344
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 157 bits (381), Expect = 1e-39
Identities = 68/168 (40%), Positives = 107/168 (63%)
Frame = +3
Query: 9 PSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVS 188
P+P+VS +VVEPYN+VL+ H ++ D T+ +DNE+ YDIC R L + P+Y +LN L++
Sbjct: 173 PAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIA 232
Query: 189 LTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELT 368
+S +T LRF G LN DL + N+VP+PR+HF + +AP+ S + + +V E+T
Sbjct: 233 QVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEIT 292
Query: 369 QQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLSIQNKNS 512
Q F+ N M CDPR GRY+ ++RG + ++V + +I+ K +
Sbjct: 293 NQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRT 340
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 111 bits (268), Expect = 5e-26
Identities = 56/169 (33%), Positives = 96/169 (56%), Gaps = 4/169 (2%)
Frame = +3
Query: 12 SPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSL 191
S VSD VV+PYN++L++ +L N D +DN AL I L NPT+ N LVS
Sbjct: 175 SQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVST 234
Query: 192 TMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRAL---TVPE 362
MS TT LR+PG +N DL + +++P PR HF + + P T++ ++ +A+ TV +
Sbjct: 235 VMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLD 294
Query: 363 LTQQMFDAKNMMAACDP-RHGRYLTVAAIFRGRMSMKEVDEQMLSIQNK 506
+ +++ KN M + +P + ++++ I +G +V + +L I+ +
Sbjct: 295 VMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRER 343
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 2.3
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +3
Query: 69 QLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 248
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 249 RKLAVNMV 272
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 76 SKTQMKPXXXXXXXXXXXVIEPLKFLIPHTVT 171
S TQ+K V +PLKFL PH T
Sbjct: 75 SLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFT 106
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = +3
Query: 9 PSPKVSDTVVE------PYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVP 152
P+P+ DTV+ PYNA+ +Q V+ T + A I Y K+P
Sbjct: 927 PNPQQQDTVINAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARESIAYFMKKLP 980
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 84 TDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVS 188
T Y + E YDIC L T LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 171 LNHLVSLTMSGVTTCLRFPGQLN 239
L HLV + G++ C +PG+ N
Sbjct: 331 LTHLVDAPLLGMSVCPLYPGEEN 353
>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
Mug22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 75 VENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSLTMSGVTT 212
+EN ++ ID+ + ++L NP++GD+ V+LT V++
Sbjct: 1 MENQVSSFLIDSPMEWKTYMKSLSDDNPSFGDVT--VNLTKISVSS 44
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 48 NAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLN-HLVSLTMSGVTTCL 218
N S+ + +EN + + AL D+ + +K + T DLN L SLT+ T +
Sbjct: 550 NTNQSLKKNLENGRAEFRLKEIALIDLANQQIKNQDKTIHDLNTELCSLTLDYCNTAV 607
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 47 QCSSLYPPASRKHR*NLLHRQRG 115
Q SSL+P +SR+H + H RG
Sbjct: 201 QLSSLHPSSSRRHLISTPHVNRG 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,496
Number of Sequences: 5004
Number of extensions: 43580
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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