Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A09
         (378 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   4.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   4.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   5.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   7.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   7.2  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    20   9.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   9.5  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 308 GER*GVSCRIRS*RPRCW 361
           GE   V+C+  + +P CW
Sbjct: 869 GEYKCVTCKCENGKPTCW 886


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 361 PTAWPLRPNPATNTSSFSSMCLRQPS 284
           P+ +P   +P  NT+++ S    QPS
Sbjct: 58  PSLFPF--SPCNNTANYKSEAQNQPS 81


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 348 GHAVGDIPGV 377
           G AVGD+PG+
Sbjct: 62  GTAVGDVPGL 71


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 14/51 (27%), Positives = 17/51 (33%)
 Frame = +3

Query: 75  REQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRK 227
           R  +W            R K NP G  +  KG V  K        N+  RK
Sbjct: 284 RRMKWKKDNKLPNTKNVRRKTNPAGVTTTTKGKVRAKTQNATPANNNDKRK 334


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 14/51 (27%), Positives = 17/51 (33%)
 Frame = +3

Query: 75  REQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRK 227
           R  +W            R K NP G  +  KG V  K        N+  RK
Sbjct: 284 RRMKWKKDNKLPNTKNVRRKTNPAGVTTTTKGKVRAKTQNATPANNNDKRK 334


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 79  SSDGPTRNSKKPTWVRDGRRTPSV 150
           + DG  R++   T   DG  TP V
Sbjct: 49  NGDGGARSNADSTSHTDGASTPDV 72


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 79  SSDGPTRNSKKPTWVRDGRRTPSV 150
           + DG  R++   T   DG  TP V
Sbjct: 205 NGDGGARSNADSTSHTDGASTPDV 228


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,469
Number of Sequences: 336
Number of extensions: 2102
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)