Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A09
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   198   2e-52
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   198   2e-52
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    43   2e-05
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    26   2.3  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    24   6.9  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   6.9  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    24   9.1  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    24   9.1  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    24   9.1  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    24   9.1  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    24   9.1  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  198 bits (484), Expect = 2e-52
 Identities = 89/118 (75%), Positives = 103/118 (87%)
 Frame = +3

Query: 24  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLKHIEENDEVLVAGFGRKGHAVGDIPGV 377
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCL  ++ENDEVL++GFGRKG A GDIPGV
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGV 118


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  198 bits (484), Expect = 2e-52
 Identities = 89/118 (75%), Positives = 103/118 (87%)
 Frame = +3

Query: 24  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLKHIEENDEVLVAGFGRKGHAVGDIPGV 377
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCL  ++ENDEVL++GFGRKG A GDIPGV
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGV 118


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 42.7 bits (96), Expect = 2e-05
 Identities = 29/76 (38%), Positives = 43/76 (56%)
 Frame = +3

Query: 150 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLKHIEENDEVLV 329
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G   + +E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 330 AGFGRKGHAVGDIPGV 377
            G GR      D PGV
Sbjct: 104 RG-GR----AQDCPGV 114


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -2

Query: 200 GFNANFFEDDALSMRCTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 21
           GF  +++ +     R   E +RLP     G  + +V    L T +  L++    P + H 
Sbjct: 350 GFKPSYYTNLNRIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPLSQCIQIPNYEHL 409

Query: 20  D 18
           D
Sbjct: 410 D 410


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 87  WADKEFKKAHMGTRWKANPFGGASHAKGIV 176
           W D EF   H   ++   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -3

Query: 364 SPTAWPLRPNPATNTSSFSSMCLRQPSRGTNAVTFLPFLMSCTRTHLRMAEFGCLASTP 188
           S  +W    + ATNTSS SS   +      N+  F  F +S    +   +   C+  TP
Sbjct: 160 SSISWNSSTSAATNTSSSSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRL-CVVGTP 217


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 191 ANFFEDDALSMRCTTEGVRLPSRT 120
           +++FE + + + CT  G R PS+T
Sbjct: 51  SSYFESEKIKIACTVSGPR-PSKT 73


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 93  DKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 188
           D+EF+   +   +K  PF    HA  +V+  V
Sbjct: 143 DREFRIGRLKFNFKPGPFNVKEHALIVVMSSV 174


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 259 LPFLMSCTRTHLRMAEFGCLAST 191
           L  L+SC +T+   A FGC   T
Sbjct: 133 LSSLLSCMKTYRATALFGCSTDT 155


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 200 GFNANFFEDDALSMRCTTEGVRLPSR 123
           G + NFFE+D  S+R  ++ +   +R
Sbjct: 11  GLSLNFFEEDGPSLRLNSDSLDFLAR 36


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 279 PRDGCLKHIEENDEVLVAGFGRKGHAVG 362
           PR+  + + + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,744
Number of Sequences: 5004
Number of extensions: 33841
Number of successful extensions: 91
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)