Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A08
(256 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 130 4e-32
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 69 7e-14
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 69 1e-13
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 60 5e-11
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 27 0.52
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 0.69
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 26 0.91
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 0.91
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 26 0.91
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 0.91
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 23 4.9
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 23 4.9
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 23 6.4
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 23 6.4
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 6.4
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 23 8.5
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 23 8.5
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 8.5
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 130 bits (313), Expect = 4e-32
Identities = 53/82 (64%), Positives = 68/82 (82%)
Frame = +1
Query: 10 GNPIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHYIPRAVLLDLEPRV 189
GN IG +FW+QLC+EHGI P+G LE FA+ G DRKDVFFYQ+DD YIPRA+L+DLEPRV
Sbjct: 14 GNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIPRAILIDLEPRV 73
Query: 190 IHSILNSPYAKLYNPENVYLSK 255
+++IL+ Y LYNPEN+ ++K
Sbjct: 74 VNNILSDTYGSLYNPENILITK 95
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 69.3 bits (162), Expect = 7e-14
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +1
Query: 4 RGGNPIGFEFWKQLCIEHGISPEGILE-EFASAGSDRK-DVFFYQADDDHYIPRAVLLDL 177
+ G IG W+ C+EHGI P G + E AS SD FF + Y+PR++ +DL
Sbjct: 11 QAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDL 70
Query: 178 EPRVIHSILNSPYAKLYNPENVYLSK 255
EP VI + PY L++PE + K
Sbjct: 71 EPNVIDQVRTGPYRDLFHPEQLITGK 96
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 68.9 bits (161), Expect = 1e-13
Identities = 28/78 (35%), Positives = 46/78 (58%)
Frame = +1
Query: 10 GNPIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHYIPRAVLLDLEPRV 189
GN +G FW + EHG+ GI + A +R +V+F +A Y+PRAVL+DLEP
Sbjct: 13 GNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGT 72
Query: 190 IHSILNSPYAKLYNPENV 243
+ ++ + + L+ P+N+
Sbjct: 73 MDAVKSGKFGNLFRPDNI 90
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 60.1 bits (139), Expect = 5e-11
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Frame = +1
Query: 4 RGGNPIGFEFWKQLCIEHGISPEGILEEFASAG------SDRKDVFFYQADDDHYIPRAV 165
+ G IG W+ C+EHGI P+G E + +D FF + ++PR++
Sbjct: 11 QAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSI 70
Query: 166 LLDLEPRVIHSILNSPYAKLYNPENVYLSK 255
+DLEP VI + PY L++PE + K
Sbjct: 71 YVDLEPNVIDQVRTGPYKDLFHPEQMVTGK 100
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 26.6 bits (56), Expect = 0.52
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 181 VLNRAVQP*VYSDHHQLDKRIHLYD 107
++N+ VQP + +H L++ IH YD
Sbjct: 761 LVNKHVQPSKHPSNHDLEELIHKYD 785
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.2 bits (55), Expect = 0.69
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 61 ISP-EGILEEFASAGSDRKDVFFYQAD 138
ISP EGI+ E A+ D D+F Y D
Sbjct: 1029 ISPVEGIIPEDANVRFDNVDIFLYDCD 1055
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 0.91
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 13 NPIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQAD 138
+P+ QL +E G S G+L + ++ D++F AD
Sbjct: 188 DPVRLGLDLQLVMELGQSKNGVLGTVSKTANEGPDIYFSNAD 229
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.8 bits (54), Expect = 0.91
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 154 PRAVLLDLEPRVIHSILNSPYAKLYNPENVYLS 252
P A ++ EP + + SP+A ++NP NV S
Sbjct: 1588 PSAGSVEREPLFLIAASGSPHAFIWNPHNVSAS 1620
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 0.91
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 151 YSDHHQLDKRIHL 113
YSDHH DKR H+
Sbjct: 428 YSDHHNNDKRAHV 440
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.8 bits (54), Expect = 0.91
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 68 PRAFWRSSLQLDRIVKMYSFIKLMMITIYLGLY 166
P + S+ + + + SF+ ++ I IYL LY
Sbjct: 385 PSQLYLDSMSFLKTMAILSFVSIVFIAIYLNLY 417
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 196 SILNSPYAKLYNPENVYLS 252
S+ P+ KLYN +NV S
Sbjct: 111 SLYEQPHTKLYNGQNVVAS 129
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 25 FEFWKQLCIEHGISPEGILEEFASAGSDRK 114
F W+ C++ G +P+ L+ F + D K
Sbjct: 29 FYKWESWCLQRGNTPKLDLDTFKAFAKDMK 58
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 116 SLRSDPAEANSSKMPSGDIPCSIHNCFQN 30
S+ +P+ ++S PSG + S +N +QN
Sbjct: 277 SIPVNPSTFSASSPPSGSMLASPYNGYQN 305
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 23.0 bits (47), Expect = 6.4
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 100 GSDRKDVFFYQ 132
G D+KDVFF+Q
Sbjct: 183 GIDKKDVFFFQ 193
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 23.0 bits (47), Expect = 6.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 205 NSPYAKLYNPENVYLSK 255
N P AK Y P ++YL +
Sbjct: 253 NFPLAKKYKPNSIYLHR 269
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 22.6 bits (46), Expect = 8.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 121 FFYQADDDHYIPRAVLLDLEPRVIHS 198
F + DD +P++ LL LE +HS
Sbjct: 620 FLNNSKDDLPVPKSPLLTLERYAMHS 645
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 22.6 bits (46), Expect = 8.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 133 ADDDHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENV 243
+D YIP V +P I +SP A L ENV
Sbjct: 189 SDPKKYIPETVPSTPQPASSLPIPSSPPAALETEENV 225
>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 340
Score = 22.6 bits (46), Expect = 8.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 89 NSSKMPSGDIPCSIHNCF 36
+SSK+ GDIP H F
Sbjct: 289 HSSKISDGDIPYKSHQVF 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,198,361
Number of Sequences: 5004
Number of extensions: 22432
Number of successful extensions: 63
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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