Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A07
(288 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812... 93 2e-20
11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338 93 3e-20
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 93 3e-20
10_07_0189 + 13928680-13928848,13929005-13929267,13929365-13929985 28 1.4
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 27 3.2
01_06_0052 - 25994156-25994485,25996861-25996878,25997668-25997880 27 3.2
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 26 4.2
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008 26 4.2
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448 26 4.2
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237... 26 5.6
11_01_0634 - 5085037-5085296,5085393-5085995,5087253-5087406,508... 25 7.4
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 25 7.4
02_01_0705 - 5259949-5263887,5266207-5266509 25 7.4
>12_02_0486 +
19577507-19577568,19578119-19578218,19581128-19581214,
19581852-19581914
Length = 103
Score = 93.5 bits (222), Expect = 2e-20
Identities = 38/55 (69%), Positives = 42/55 (76%)
Frame = +1
Query: 64 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 228
MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL CRQCFR A DIGF K+
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKV 55
>11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338
Length = 56
Score = 93.1 bits (221), Expect = 3e-20
Identities = 38/54 (70%), Positives = 41/54 (75%)
Frame = +1
Query: 64 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 225
MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL CRQCFR A DIGF K
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 93.1 bits (221), Expect = 3e-20
Identities = 38/54 (70%), Positives = 41/54 (75%)
Frame = +1
Query: 64 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 225
MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL CRQCFR A DIGF K
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
>10_07_0189 + 13928680-13928848,13929005-13929267,13929365-13929985
Length = 350
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 255 KNLLNLSLVQLFKSNIMRILSEALPADIQAIFTNETMS 142
K L +L+L +L+K I R E P DI A +T S
Sbjct: 143 KELADLALYRLYKKKITRGTGEEKPEDIAAASDGDTES 180
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 288 LEFFFFFFAYIKNLLNLSLVQLFKSNIMRILSEALP 181
+ F F+FF ++ ++ SL F RILS ALP
Sbjct: 454 INFKFWFFCSLQFMMASSLFSYFFGMKSRILSPALP 489
>01_06_0052 - 25994156-25994485,25996861-25996878,25997668-25997880
Length = 186
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 148 HVCLSRLGMNGNPARIYVGVNTRYLRD 68
H C +R G GNP + + ++R LRD
Sbjct: 157 HSCAARSGKFGNPCKRFCVFSSRELRD 183
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 158 RMRPCLFEQARHEREPCP 105
R RP L+EQ+ H R+P P
Sbjct: 144 RRRPPLYEQSPHRRQPGP 161
>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
Length = 749
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 131 PAQTDMVSFVNMA*ISAGSASESMRMILDLKSWTKLRFNK 250
P+ DM + +++ A AS + ++LD +WT+ R+ +
Sbjct: 585 PSSPDMAAACHLSYYCAYLASAAPELLLDSAAWTEKRYKE 624
>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
Length = 850
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 41 RKQTNFTSWVTQISGIHTHVDTGRVPVHAEPAQT 142
R+ ++FTSWV + + G+ P A P Q+
Sbjct: 755 RRLSSFTSWVPDLRRVWALKHPGKEPAAAAPPQS 788
>04_04_0910 -
29321128-29321276,29321977-29322508,29323301-29323706,
29323933-29324028,29324563-29324645,29326620-29326732,
29327156-29327315
Length = 512
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 79 IWYSHPRRYGQGSRSCRACSNRHG 150
IW H RR G+GS + R +RHG
Sbjct: 306 IWPPHARRDGRGSEAAR--MSRHG 327
>11_01_0634 -
5085037-5085296,5085393-5085995,5087253-5087406,
5087510-5087671,5087789-5088676
Length = 688
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 166 HIYE*DHVCLSRLGMNGNPARIYVGVNTRYLRDP*CKISLF 44
H Y SR +G+P R + V+ RYLR C++S F
Sbjct: 438 HTYSCRRAVASREAADGDPERPLLLVSPRYLRSL-CRLSGF 477
>07_03_0918 -
22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 258 IKNLLNLSLVQLFKSNIMRILSEALPADIQAIFTNE 151
+ N+LNL+L +L ++ + SE + QA+F N+
Sbjct: 726 VVNILNLALPRLKSASDTKAESEKIIKQTQALFKNQ 761
>02_01_0705 - 5259949-5263887,5266207-5266509
Length = 1413
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 198 LSEALPADIQAIFTNETMSV*AGSA*TGTLPV 103
LS ++P+ I I TM +G+A TGTLP+
Sbjct: 830 LSGSIPSGIGNILPQITMLDLSGNALTGTLPL 861
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,586,612
Number of Sequences: 37544
Number of extensions: 149559
Number of successful extensions: 300
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -