Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A07
         (288 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...   102   4e-23
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    32   0.076
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    32   0.076
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p...    28   1.2  
Z49908-3|CAA90094.2|  382|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical pr...    26   5.0  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z82282-8|CAB05278.1|  575|Caenorhabditis elegans Hypothetical pr...    25   6.6  
AF016444-8|AAB65934.1|  219|Caenorhabditis elegans Hypothetical ...    25   6.6  
Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...    25   8.7  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    25   8.7  
AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    25   8.7  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score =  102 bits (245), Expect = 4e-23
 Identities = 40/56 (71%), Positives = 48/56 (85%)
 Frame = +1

Query: 64  MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 231
           MG  N+W+SHPR++G GSRSCR C+  HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 124 CRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 225
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 124 CRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 225
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90


>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 68  VTQISGIHTHVDTGRVPVHAEPAQTDMVSFVNMA*ISAGSASESMRMILD 217
           V  I+ I T + TG++  HA PA T +V  + +   ++   S S  + +D
Sbjct: 325 VINITPIPTPISTGQIVTHASPAGTVIVPVLPLQPGTSNQESSSKTVSID 374


>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 68  VTQISGIHTHVDTGRVPVHAEPAQTDMVSFVNMA*ISAGSASESMRMILD 217
           V  I+ I T + TG++  HA PA T +V  + +   ++   S S  + +D
Sbjct: 325 VINITPIPTPISTGQIVTHASPAGTVIVPVLPLQPGTSNQESSSKTVSID 374


>Z49908-3|CAA90094.2|  382|Caenorhabditis elegans Hypothetical
           protein C07E3.3 protein.
          Length = 382

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 86  IHTHVDTGRVPVHAEPAQT 142
           +H H + GR PV+  PAQT
Sbjct: 252 LHRHPEVGRHPVYVLPAQT 270


>U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical
           protein K10D2.1b protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 75  KYLVFTPT*IRAGFPFMPSLLKQTW 149
           KYL+ TP  +R+G P +  + +QTW
Sbjct: 237 KYLM-TPAAVRSGKPLIKLIQRQTW 260


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
           protein K10D2.1a protein.
          Length = 1223

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 75  KYLVFTPT*IRAGFPFMPSLLKQTW 149
           KYL+ TP  +R+G P +  + +QTW
Sbjct: 525 KYLM-TPAAVRSGKPLIKLIQRQTW 548


>Z82282-8|CAB05278.1|  575|Caenorhabditis elegans Hypothetical
           protein T07G12.11 protein.
          Length = 575

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = -2

Query: 185 CLQIFKPYLRM-RPCLFEQAR-HEREPCPYLRGCEYQIFA*PMM 60
           C QI    LR  +  L + A  HE E C   R CEY     P M
Sbjct: 447 CKQILSWKLRYGKQRLLDHAMTHENEKCLVCRTCEYSCSTHPQM 490


>AF016444-8|AAB65934.1|  219|Caenorhabditis elegans Hypothetical
           protein C36C5.12 protein.
          Length = 219

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 2   HEDFDRVSLFWVSRKQTNFTSWVTQISGIHTHVDTGRV 115
           HEDF   S    ++K   F +W     GIH   D  +V
Sbjct: 127 HEDFSDCSDKLTAKKSVCFDNWDPIPDGIHLEEDEKKV 164


>Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical
           protein T16G1.4 protein.
          Length = 436

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 240 LSLVQLFKSNIMRILSEALPADIQAIFTNET 148
           + L++  K +   ++++A  AD+ A+F NE+
Sbjct: 86  VGLLEKLKESEQNVINDANEADLMALFENES 116


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 157 RKYGLNICRQCFREYAHDIGFK 222
           R YGL +C  C R +  + GF+
Sbjct: 234 RAYGLYVCTTCQRRFRDNKGFQ 255


>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical
           protein F21G4.6 protein.
          Length = 1885

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 270 FFAYIKNLLNLSLVQLFKSNI-MRILSEA 187
           ++ Y+  L+NL+ + L K+N  +R+ +EA
Sbjct: 49  YYRYVHRLMNLTFISLEKNNADIRLAAEA 77


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 267 FAYIKNLLNLSLVQLFKSNIMR 202
           F Y KN +NLS   +  SNI+R
Sbjct: 648 FKYSKNNINLSYSNIVASNILR 669


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 267 FAYIKNLLNLSLVQLFKSNIMR 202
           F Y KN +NLS   +  SNI+R
Sbjct: 648 FKYSKNNINLSYSNIVASNILR 669


>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 112 GSRSCRACSNRHG-LIRKYGLNICRQC 189
           GSR+      R G LI +  LN+CRQC
Sbjct: 326 GSRTPALSRVREGVLIAELDLNLCRQC 352


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 267 FAYIKNLLNLSLVQLFKSNIMR 202
           F Y KN +NLS   +  SNI+R
Sbjct: 694 FKYSKNNINLSYSNIVASNILR 715


>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 178 CRQCFREYAHDIGFKK 225
           C  CF+EYAH  G  +
Sbjct: 330 CAICFKEYAHQAGLSE 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,559,814
Number of Sequences: 27780
Number of extensions: 130098
Number of successful extensions: 328
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)