Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A06
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 29 0.72
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.2
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 27 2.9
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 26 5.1
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 25 6.7
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 25 6.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 6.7
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 25 8.9
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 25 8.9
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c... 25 8.9
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 28.7 bits (61), Expect = 0.72
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 313 CLINFRW*F---LRLPWLSRVTGNQGSIPEREPEKRLP 417
C+IN W LRL +L + NQ S E++ EKR+P
Sbjct: 271 CMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 76 NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDGNECFY 198
N IY+ +F ++S++ + + I L +RT++SD + Y
Sbjct: 14 NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSDSSVSLY 54
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 346 LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKN 483
+P +S V + IPER+ + L P + H EVV +N
Sbjct: 757 VPCISGVMLHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQN 802
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 426 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 328
P MW P N+ + YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = -2
Query: 304 KDASPVLDHAIGKSYPDSSKLTTSDARPSVDWF*SNKSTHSHHW 173
K +P I Y SS L +DWF + S + HW
Sbjct: 413 KILAPTFGRVIRLMYTMSSDLPLQTLDRFIDWFSHHLSNFNFHW 456
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 424 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 323
L ++ S+ P + PD P T+ V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 49 CKPY*GDTANGSIYQFWFL-RSYSVTWITVVILELIHAIRTLTSDGNECFY*IKTNRRRA 225
C G + +I + W L R + WI + I + ++ + D N Y I T+ +
Sbjct: 81 CLQILGIATSYTILRSWLLSRKHIEAWIELAIRRMFYSFCAIQDDSNISIYAIGTSSKTD 140
Query: 226 S 228
S
Sbjct: 141 S 141
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 202 IKTNRRRASRPMSLILMNLDNFCRSHGPVPATHLSNVCLINFRW*FLRLPW 354
I N A P+ IL + +GP+ ++V L NF + R+ W
Sbjct: 383 IVNNTAAAGLPLFQILNGTTVIAQGYGPLNILGNNSVVLYNFNFCTTRISW 433
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 310 HLKDASPVLDHAIGKSYPDSSKLTTSDAR 224
HL+D S H++ KS + L TSD R
Sbjct: 211 HLQDVSSPSAHSLEKSLHKPASLQTSDKR 239
>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
3|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 606 TLWSXELPRLLAPDLPSNCSSLKYL 532
T WS ++P +L P N + KYL
Sbjct: 65 TAWSTKIPAVLLPVFVINIALFKYL 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,781
Number of Sequences: 5004
Number of extensions: 55316
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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