Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A06
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    31   0.88 
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   4.7  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
 Frame = +1

Query: 67  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTS-DGNECFY*IKTNRRRASRPMSL 243
           D+  G++   WF +++SV WI +V+   I   +T+      E     +T R + S P+  
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTVVGYKAGE-----QTYRVKGSIPVPF 278

Query: 244 ILMNLDN-FCRSHGPVPATHL---SNVCLIN 324
            +  L N +  S  P P   L   S+VC I+
Sbjct: 279 AVPTLGNCYSGSIAPSPVFFLRSMSSVCTIS 309


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 433 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI-ES**GRHLKDASPVLDHAIGKSYP 257
           +P+  V+  ++ PS +S     + VTT  V+ TTI  S         + V   A   + P
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTITTSTPPSTTSPTTTVTPVATSSATP 618

Query: 256 DSSKLTTS 233
             SK TT+
Sbjct: 619 KPSKRTTT 626


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 450 GNLRACCLPWMW*PFLRLPLR 388
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,706,725
Number of Sequences: 27780
Number of extensions: 311596
Number of successful extensions: 822
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)