Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A05
(515 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q8ISR8 Cluster: Polyadenylate binding protein; n=7; Coe... 144 8e-34
UniRef50_UPI0000D578C8 Cluster: PREDICTED: similar to poly A bin... 135 6e-31
UniRef50_Q5T3B0 Cluster: Poly(A) binding protein, cytoplasmic 4;... 131 8e-30
UniRef50_Q13310 Cluster: Polyadenylate-binding protein 4 (Poly(A... 131 8e-30
UniRef50_P21187 Cluster: Polyadenylate-binding protein (Poly(A)-... 124 9e-28
UniRef50_A7SSV8 Cluster: Predicted protein; n=1; Nematostella ve... 113 2e-24
UniRef50_UPI000065E5EA Cluster: Polyadenylate-binding protein 1-... 105 5e-22
UniRef50_Q4SJ33 Cluster: Chromosome 21 SCAF14577, whole genome s... 103 2e-21
UniRef50_Q4VXT5 Cluster: Chromosome 20 open reading frame 119; n... 91 1e-17
UniRef50_Q4UID9 Cluster: Polyadenylate (Poly(A)) binding protein... 89 4e-17
UniRef50_A1EAA0 Cluster: Polyadenylate-binding protein; n=3; Pla... 84 2e-15
UniRef50_Q5KBW2 Cluster: Polyadenylate-binding protein, cytoplas... 83 3e-15
UniRef50_Q2GSX8 Cluster: Polyadenylate-binding protein, cytoplas... 83 5e-15
UniRef50_Q7K797 Cluster: Putative uncharacterized protein pab-1;... 82 8e-15
UniRef50_Q7RDM4 Cluster: PolyA binding protein-related; n=5; Pla... 81 1e-14
UniRef50_A6RJZ8 Cluster: Putative uncharacterized protein; n=2; ... 81 1e-14
UniRef50_A7ARL3 Cluster: Polyadenylate binding protein, putative... 80 3e-14
UniRef50_Q5CLX5 Cluster: Poly(A)-binding protein fabm; n=3; Cryp... 79 6e-14
UniRef50_Q1DXH0 Cluster: Polyadenylate-binding protein, cytoplas... 79 8e-14
UniRef50_UPI000069E108 Cluster: UPI000069E108 related cluster; n... 77 3e-13
UniRef50_Q10N87 Cluster: Polyadenylate binding protein, types 1,... 76 4e-13
UniRef50_UPI0000D577C9 Cluster: PREDICTED: similar to poly(A) bi... 74 2e-12
UniRef50_Q5YBC0 Cluster: Polyadenylate binding protein; n=1; Hel... 73 4e-12
UniRef50_Q5DA36 Cluster: SJCHGC06322 protein; n=3; Bilateria|Rep... 71 2e-11
UniRef50_Q4FW55 Cluster: Poly(A) binding protein, putative; n=6;... 71 2e-11
UniRef50_Q05196 Cluster: Polyadenylate-binding protein 5 (Poly(A... 70 3e-11
UniRef50_A3AVD4 Cluster: Putative uncharacterized protein; n=3; ... 68 1e-10
UniRef50_A4S0L2 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 68 1e-10
UniRef50_Q9ZQA8 Cluster: Probable polyadenylate-binding protein ... 67 2e-10
UniRef50_UPI0000D56085 Cluster: PREDICTED: similar to CG9484-PA;... 65 8e-10
UniRef50_O95071 Cluster: E3 ubiquitin-protein ligase EDD1; n=30;... 63 3e-09
UniRef50_Q9LT82 Cluster: Poly(A)-binding protein-like; n=1; Arab... 58 1e-07
UniRef50_UPI00015B526D Cluster: PREDICTED: similar to ubiquitin-... 55 8e-07
UniRef50_A2YEJ3 Cluster: Putative uncharacterized protein; n=1; ... 54 2e-06
UniRef50_P51592 Cluster: E3 ubiquitin-protein ligase hyd; n=14; ... 54 2e-06
UniRef50_Q178F7 Cluster: Ubiquitin-protein ligase; n=1; Aedes ae... 54 3e-06
UniRef50_Q54BM2 Cluster: RNA-binding region-containing protein; ... 53 4e-06
UniRef50_O96606 Cluster: Polyadenylate-binding protein 1; n=6; T... 52 8e-06
UniRef50_UPI0000E4A36C Cluster: PREDICTED: similar to zinc finge... 51 2e-05
UniRef50_Q4TBX5 Cluster: Chromosome undetermined SCAF7082, whole... 49 6e-05
UniRef50_A7SCP7 Cluster: Predicted protein; n=2; Nematostella ve... 49 7e-05
UniRef50_A7NTZ5 Cluster: Chromosome chr18 scaffold_1, whole geno... 47 3e-04
UniRef50_Q4QA88 Cluster: Poly(A)-binding protein, putative; n=3;... 47 3e-04
UniRef50_A5BL38 Cluster: Putative uncharacterized protein; n=1; ... 46 7e-04
UniRef50_A7TSM7 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_Q6CG61 Cluster: Similar to sp|P31209 Schizosaccharomyce... 43 0.004
UniRef50_P04147 Cluster: Polyadenylate-binding protein, cytoplas... 42 0.011
UniRef50_A6XGR1 Cluster: PolyA-binding protein; n=1; Polytomella... 40 0.025
UniRef50_Q5C2H5 Cluster: SJCHGC03468 protein; n=1; Schistosoma j... 37 0.31
UniRef50_Q23D16 Cluster: Putative uncharacterized protein; n=1; ... 36 0.72
UniRef50_UPI00004D7430 Cluster: Serologically defined colon canc... 33 2.9
UniRef50_Q23MM3 Cluster: Putative uncharacterized protein; n=1; ... 33 3.9
UniRef50_Q2RMP5 Cluster: Putative uncharacterized protein; n=1; ... 32 6.8
UniRef50_A6EVH2 Cluster: Lipoprotein, putative; n=1; Marinobacte... 32 6.8
UniRef50_UPI0000E2189C Cluster: PREDICTED: similar to phogrin; n... 32 8.9
UniRef50_A7RV65 Cluster: Predicted protein; n=1; Nematostella ve... 32 8.9
>UniRef50_Q8ISR8 Cluster: Polyadenylate binding protein; n=7;
Coelomata|Rep: Polyadenylate binding protein -
Spodoptera frugiperda (Fall armyworm)
Length = 86
Score = 144 bits (350), Expect = 8e-34
Identities = 72/87 (82%), Positives = 72/87 (82%)
Frame = +2
Query: 107 GVAGTAGSIRAPLVTQSSRPAGYKYTANMRNPPAPQPAVHIQGQEXXXXXXXXXXXXQEQ 286
GVA TA SIRAPLVTQS RPAGYKYTANMRNPPAPQPAVHIQGQE QEQ
Sbjct: 1 GVA-TAASIRAPLVTQSGRPAGYKYTANMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQ 59
Query: 287 KQMLGERLFPLIQRMHPDLAGKITGML 367
KQMLGERLFPLIQRMHPDLAGKITGML
Sbjct: 60 KQMLGERLFPLIQRMHPDLAGKITGML 86
>UniRef50_UPI0000D578C8 Cluster: PREDICTED: similar to poly A
binding protein, cytoplasmic 1 isoform 2; n=2;
Coelomata|Rep: PREDICTED: similar to poly A binding
protein, cytoplasmic 1 isoform 2 - Tribolium castaneum
Length = 558
Score = 135 bits (326), Expect = 6e-31
Identities = 80/124 (64%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
Frame = +2
Query: 86 RPITGQQGVAGTAGSIRAPLVTQSS-RPAGYKYTANMRNPPAPQPAVHIQGQEXXXXXXX 262
RPITGQQ G PL +Q+ PAG + N Q AVHIQGQE
Sbjct: 430 RPITGQQP-PNIQGR---PLASQAVVAPAGL----GISNAAPVQQAVHIQGQEPLTATML 481
Query: 263 XXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEA 442
QEQKQMLGERLFPLIQRM+PDLAGKITGMLLEIDNSELLHMLEH ESLKAKV+EA
Sbjct: 482 AAAPPQEQKQMLGERLFPLIQRMYPDLAGKITGMLLEIDNSELLHMLEHNESLKAKVEEA 541
Query: 443 VAVL 454
VAVL
Sbjct: 542 VAVL 545
>UniRef50_Q5T3B0 Cluster: Poly(A) binding protein, cytoplasmic 4;
n=6; Euarchontoglires|Rep: Poly(A) binding protein,
cytoplasmic 4 - Homo sapiens (Human)
Length = 194
Score = 131 bits (317), Expect = 8e-30
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 63 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 122
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 123 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 177
>UniRef50_Q13310 Cluster: Polyadenylate-binding protein 4
(Poly(A)-binding protein 4) (PABP 4) (Inducible
poly(A)-binding protein); n=244; Eukaryota|Rep:
Polyadenylate-binding protein 4 (Poly(A)-binding protein
4) (PABP 4) (Inducible poly(A)-binding protein) - Homo
sapiens (Human)
Length = 644
Score = 131 bits (317), Expect = 8e-30
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 509 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 568
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 569 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 623
>UniRef50_P21187 Cluster: Polyadenylate-binding protein
(Poly(A)-binding protein); n=6; Bilateria|Rep:
Polyadenylate-binding protein (Poly(A)-binding protein)
- Drosophila melanogaster (Fruit fly)
Length = 634
Score = 124 bits (300), Expect = 9e-28
Identities = 73/134 (54%), Positives = 88/134 (65%), Gaps = 9/134 (6%)
Frame = +2
Query: 80 GARPITGQQGVAGTAGSIRAPLVTQSS-RPAGYKYTANMRNPPAPQ-----PAVH-IQGQ 238
GAR ITGQQ A A + + R + YKYT+NMRNPP PQ P +QG+
Sbjct: 491 GARAITGQQTAAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPIPQQLQGK 550
Query: 239 --EXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHG 412
E QEQKQ+LGERL+P+I+ MH +LAGKITGMLLEI+NSELLHM+E
Sbjct: 551 NSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQ 610
Query: 413 ESLKAKVDEAVAVL 454
E+LKAKV+EAVAVL
Sbjct: 611 EALKAKVEEAVAVL 624
>UniRef50_A7SSV8 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 584
Score = 113 bits (273), Expect = 2e-24
Identities = 71/139 (51%), Positives = 86/139 (61%), Gaps = 14/139 (10%)
Frame = +2
Query: 80 GARPITGQQGV--AGTAGSIRAPLVTQSSRPAG-------YKYTANMRNPPA----PQPA 220
G + + GQ G+ G AG R P+ Q +R G YK++ +RNPP P+
Sbjct: 429 GVQNMGGQAGMPQGGPAGMPRMPV--QQARMGGVPPQRQPYKFSQTVRNPPPAGQMPEGG 486
Query: 221 VHIQG-QEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLH 397
I G QE QEQKQMLGERLFPLIQ HPD+AGKITGMLLEIDN+ELLH
Sbjct: 487 QGIPGGQEPLNPSVLAAATPQEQKQMLGERLFPLIQTNHPDMAGKITGMLLEIDNAELLH 546
Query: 398 MLEHGESLKAKVDEAVAVL 454
MLE ++L+ KVDEAV+VL
Sbjct: 547 MLESRDALQMKVDEAVSVL 565
>UniRef50_UPI000065E5EA Cluster: Polyadenylate-binding protein
1-like.; n=3; Euteleostomi|Rep: Polyadenylate-binding
protein 1-like. - Takifugu rubripes
Length = 648
Score = 105 bits (253), Expect = 5e-22
Identities = 60/118 (50%), Positives = 74/118 (62%), Gaps = 5/118 (4%)
Frame = +2
Query: 95 TGQQGVAGTAGSIRAPLVTQSSRPAGYKYTANMRNP---PAP--QPAVHIQGQEXXXXXX 259
T G G P V +S + YKY++ +RN P P +P+V+IQGQE
Sbjct: 534 TNNIGTQTVGGRAELPGVPRSGQ---YKYSSAVRNAQQVPGPVLEPSVYIQGQEPLTASM 590
Query: 260 XXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKV 433
+QKQ+LGERL+PLI +HP+LAGKITGMLLEIDNSELLHMLE ESL +KV
Sbjct: 591 LAAAPLMDQKQLLGERLYPLISTLHPNLAGKITGMLLEIDNSELLHMLETPESLHSKV 648
>UniRef50_Q4SJ33 Cluster: Chromosome 21 SCAF14577, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 21
SCAF14577, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 380
Score = 103 bits (248), Expect = 2e-21
Identities = 54/74 (72%), Positives = 56/74 (75%)
Frame = +2
Query: 233 GQEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHG 412
GQE EQKQMLGERLFPLIQ MH LAGKITGMLLEIDNSELLHMLE
Sbjct: 285 GQEPLTTSMLAAAPLHEQKQMLGERLFPLIQAMHLSLAGKITGMLLEIDNSELLHMLESP 344
Query: 413 ESLKAKVDEAVAVL 454
ESL++KVDEAVAVL
Sbjct: 345 ESLRSKVDEAVAVL 358
>UniRef50_Q4VXT5 Cluster: Chromosome 20 open reading frame 119; n=6;
Homo sapiens|Rep: Chromosome 20 open reading frame 119 -
Homo sapiens (Human)
Length = 171
Score = 91.5 bits (217), Expect = 1e-17
Identities = 47/73 (64%), Positives = 51/73 (69%)
Frame = +2
Query: 212 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSEL 391
+PAVHI GQE EQKQM+GERL+PLI +H LAGKITGMLLEIDNSEL
Sbjct: 74 EPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSEL 133
Query: 392 LHMLEHGESLKAK 430
L MLE ESL AK
Sbjct: 134 LLMLESPESLHAK 146
>UniRef50_Q4UID9 Cluster: Polyadenylate (Poly(A)) binding protein,
putative; n=2; Theileria|Rep: Polyadenylate (Poly(A))
binding protein, putative - Theileria annulata
Length = 664
Score = 89.4 bits (212), Expect = 4e-17
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +2
Query: 284 QKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QKQM+GERLFP+I R +PDLAGKITGM+LEIDN ELL +LE + LKAK+DEA+ VL
Sbjct: 604 QKQMIGERLFPIIARDNPDLAGKITGMMLEIDNHELLQLLEDNDQLKAKIDEAIKVL 660
>UniRef50_A1EAA0 Cluster: Polyadenylate-binding protein; n=3;
Plasmodium|Rep: Polyadenylate-binding protein -
Plasmodium falciparum
Length = 875
Score = 84.2 bits (199), Expect = 2e-15
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = +2
Query: 284 QKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QKQ+LGE LFPL+ HP LAGKITGM+LE+DNSELL +LE+ E LK K+DEA+ VL
Sbjct: 815 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVL 871
>UniRef50_Q5KBW2 Cluster: Polyadenylate-binding protein, cytoplasmic
and nuclear (Poly(A)- binding protein); n=2;
Eukaryota|Rep: Polyadenylate-binding protein,
cytoplasmic and nuclear (Poly(A)- binding protein) -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 673
Score = 83.4 bits (197), Expect = 3e-15
Identities = 39/58 (67%), Positives = 48/58 (82%)
Frame = +2
Query: 281 EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
EQKQMLGE L+PLI P+LAGKITGMLLE+DN+ELLH++E +L+ KVDEA+ VL
Sbjct: 584 EQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641
>UniRef50_Q2GSX8 Cluster: Polyadenylate-binding protein, cytoplasmic
and nuclear (Poly(A)- binding protein); n=6;
Pezizomycotina|Rep: Polyadenylate-binding protein,
cytoplasmic and nuclear (Poly(A)- binding protein) -
Chaetomium globosum (Soil fungus)
Length = 783
Score = 82.6 bits (195), Expect = 5e-15
Identities = 39/58 (67%), Positives = 50/58 (86%)
Frame = +2
Query: 278 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAV 451
Q+QKQ+LGE LFP IQ + PDLAGKITGMLLE+DN+EL+++LE +L AKV+EA+AV
Sbjct: 690 QQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAKVNEAMAV 747
>UniRef50_Q7K797 Cluster: Putative uncharacterized protein pab-1;
n=2; Caenorhabditis elegans|Rep: Putative
uncharacterized protein pab-1 - Caenorhabditis elegans
Length = 586
Score = 81.8 bits (193), Expect = 8e-15
Identities = 51/116 (43%), Positives = 66/116 (56%), Gaps = 9/116 (7%)
Frame = +2
Query: 134 RAPLVTQSSRPAGYKYTANMRNPPAPQPA-------VHIQGQEXXXXXXXXXXXXQEQKQ 292
R P Q RPA + PP P A + I GQE QEQKQ
Sbjct: 469 RPPQQQQQQRPA----PTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQ 524
Query: 293 MLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+LGER++ LI++++P AGKITGM+LEIDNSEL+ ML+ E ++KVDEA +VL
Sbjct: 525 LLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 580
>UniRef50_Q7RDM4 Cluster: PolyA binding protein-related; n=5;
Plasmodium (Vinckeia)|Rep: PolyA binding protein-related
- Plasmodium yoelii yoelii
Length = 859
Score = 81.4 bits (192), Expect = 1e-14
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +2
Query: 284 QKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVA 448
QKQ+LGE LFPL+ HP LAGKITGM+LE+DNSELL +LE+ + LK K+DEA+A
Sbjct: 781 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEDQLKKKIDEALA 835
>UniRef50_A6RJZ8 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 790
Score = 81.0 bits (191), Expect = 1e-14
Identities = 37/58 (63%), Positives = 49/58 (84%)
Frame = +2
Query: 278 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAV 451
Q+QKQ+LGE LFP IQ + P+LAGKITGMLLE++N EL++++E SL+AKVDEA+ V
Sbjct: 704 QQQKQILGEALFPKIQVLQPELAGKITGMLLEMENQELINLIEDDASLRAKVDEALTV 761
>UniRef50_A7ARL3 Cluster: Polyadenylate binding protein, putative;
n=1; Babesia bovis|Rep: Polyadenylate binding protein,
putative - Babesia bovis
Length = 585
Score = 80.2 bits (189), Expect = 3e-14
Identities = 44/99 (44%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Frame = +2
Query: 167 AGYKYTANMRNP---PAPQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHP 337
+G+K+TA RN P PA + Q KQM+GERLFP++ R +P
Sbjct: 490 SGFKFTAQARNRTELPNGAPAAAVPTQRPIDGAAM-------HKQMIGERLFPIVARENP 542
Query: 338 DLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+LAGKITGM+LE+DN EL+ +LE+ + LK K+ EA+ VL
Sbjct: 543 ELAGKITGMMLEMDNQELMALLENEQQLKDKIQEAMRVL 581
>UniRef50_Q5CLX5 Cluster: Poly(A)-binding protein fabm; n=3;
Cryptosporidium|Rep: Poly(A)-binding protein fabm -
Cryptosporidium hominis
Length = 746
Score = 79.0 bits (186), Expect = 6e-14
Identities = 43/90 (47%), Positives = 56/90 (62%)
Frame = +2
Query: 185 ANMRNPPAPQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGM 364
A ++NP PQP V + QKQ+LGERLFP+I + P+LAGKITGM
Sbjct: 654 ALVQNPLIPQPDVPLTAATLAAASPSM------QKQLLGERLFPIIAQFQPELAGKITGM 707
Query: 365 LLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+LE+DN+ELL +L +K KVDEA+ VL
Sbjct: 708 MLEMDNNELLELLSSDIEIKNKVDEAMVVL 737
>UniRef50_Q1DXH0 Cluster: Polyadenylate-binding protein, cytoplasmic
and nuclear (Poly(A)- binding protein); n=11;
Pezizomycotina|Rep: Polyadenylate-binding protein,
cytoplasmic and nuclear (Poly(A)- binding protein) -
Coccidioides immitis
Length = 768
Score = 78.6 bits (185), Expect = 8e-14
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +2
Query: 281 EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAV 451
+QKQMLGE ++P IQ P+LAGKITGMLLE+DN+ELL +++ +LKAKVDEA+ V
Sbjct: 677 QQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
>UniRef50_UPI000069E108 Cluster: UPI000069E108 related cluster; n=1;
Xenopus tropicalis|Rep: UPI000069E108 UniRef100 entry -
Xenopus tropicalis
Length = 405
Score = 76.6 bits (180), Expect = 3e-13
Identities = 39/80 (48%), Positives = 51/80 (63%)
Frame = +2
Query: 215 PAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELL 394
PA+ +QGQE EQKQMLG RLFPL+Q + LA KITG+LLE D SE++
Sbjct: 304 PAICVQGQEPLTISLLVSASPHEQKQMLGVRLFPLVQIIDKKLAEKITGILLEFDTSEII 363
Query: 395 HMLEHGESLKAKVDEAVAVL 454
+MLE E L+ ++AV +L
Sbjct: 364 YMLESPELLRTMANKAVTLL 383
>UniRef50_Q10N87 Cluster: Polyadenylate binding protein, types 1, 2,
3, 4 family protein, expressed; n=4; Magnoliophyta|Rep:
Polyadenylate binding protein, types 1, 2, 3, 4 family
protein, expressed - Oryza sativa subsp. japonica (Rice)
Length = 647
Score = 76.2 bits (179), Expect = 4e-13
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = +2
Query: 278 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+EQK MLG RL+PL++R HPDLA KITGMLLE+ NSE++ +L L AK++E V +L
Sbjct: 562 EEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLL 620
>UniRef50_UPI0000D577C9 Cluster: PREDICTED: similar to poly(A)
binding protein, cytoplasmic 1; n=1; Tribolium
castaneum|Rep: PREDICTED: similar to poly(A) binding
protein, cytoplasmic 1 - Tribolium castaneum
Length = 565
Score = 74.1 bits (174), Expect = 2e-12
Identities = 35/58 (60%), Positives = 49/58 (84%)
Frame = +2
Query: 281 EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+ K+MLGER++ +I++ +P++AGKITGMLLEID SEL ++ + SLKAKV+EAVAVL
Sbjct: 497 DDKRMLGERMYRVIEKTYPEIAGKITGMLLEIDISELKALVNNEGSLKAKVEEAVAVL 554
>UniRef50_Q5YBC0 Cluster: Polyadenylate binding protein; n=1;
Helicosporidium sp. ex Simulium jonesii|Rep:
Polyadenylate binding protein - Helicosporidium sp.
subsp. Simulium jonesii (Green alga)
Length = 107
Score = 72.9 bits (171), Expect = 4e-12
Identities = 35/59 (59%), Positives = 47/59 (79%)
Frame = +2
Query: 278 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
++QKQ+LGE+LFP + + P+LA KITGMLLE+DNSEL+ ++E E+L KV EAV VL
Sbjct: 24 EQQKQLLGEQLFPKVAQHQPELAAKITGMLLEMDNSELVLLIETPEALADKVAEAVEVL 82
>UniRef50_Q5DA36 Cluster: SJCHGC06322 protein; n=3; Bilateria|Rep:
SJCHGC06322 protein - Schistosoma japonicum (Blood
fluke)
Length = 721
Score = 70.5 bits (165), Expect = 2e-11
Identities = 31/58 (53%), Positives = 46/58 (79%)
Frame = +2
Query: 281 EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+QK+ LGE LFP IQ M+P LA K+TGMLL +DN+E++++LE + L+AK +E ++VL
Sbjct: 630 DQKRALGEHLFPRIQTMYPTLARKLTGMLLGVDNAEVINLLESDDLLRAKCEEGISVL 687
>UniRef50_Q4FW55 Cluster: Poly(A) binding protein, putative; n=6;
Trypanosomatidae|Rep: Poly(A) binding protein, putative
- Leishmania major strain Friedlin
Length = 594
Score = 70.5 bits (165), Expect = 2e-11
Identities = 47/129 (36%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Frame = +2
Query: 98 GQQGVAGTAGSIRAPLVTQSSRPAGYKYTANMRNPPAPQ--------PAVHIQG--QEXX 247
G G+ G G + +RP + MR+ P PQ P H Q Q
Sbjct: 460 GMGGMGGMGGMGSMGGMGGMARPMAPNAMSQMRSRPMPQKPPMQSLMPQQHQQAPPQGQN 519
Query: 248 XXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKA 427
++QK +LGERL+ I R HP +A KITGMLLE+DN+E+L+ML+ L +
Sbjct: 520 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNAEILNMLDSPTMLDS 579
Query: 428 KVDEAVAVL 454
K+ EA VL
Sbjct: 580 KIAEAQDVL 588
>UniRef50_Q05196 Cluster: Polyadenylate-binding protein 5
(Poly(A)-binding protein 5); n=47; Viridiplantae|Rep:
Polyadenylate-binding protein 5 (Poly(A)-binding protein
5) - Arabidopsis thaliana (Mouse-ear cress)
Length = 668
Score = 70.1 bits (164), Expect = 3e-11
Identities = 31/55 (56%), Positives = 44/55 (80%)
Frame = +2
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+MLG+ L+PL+++ P A K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL
Sbjct: 592 RMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVL 646
>UniRef50_A3AVD4 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 611
Score = 68.1 bits (159), Expect = 1e-10
Identities = 30/59 (50%), Positives = 47/59 (79%)
Frame = +2
Query: 278 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LE E+LK+KV EA+ VL
Sbjct: 526 EQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVL 584
>UniRef50_A4S0L2 Cluster: Predicted protein; n=2; Eukaryota|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 572
Score = 67.7 bits (158), Expect = 1e-10
Identities = 44/118 (37%), Positives = 60/118 (50%)
Frame = +2
Query: 101 QQGVAGTAGSIRAPLVTQSSRPAGYKYTANMRNPPAPQPAVHIQGQEXXXXXXXXXXXXQ 280
Q+G G G Q+ R Y A M PP P A +
Sbjct: 453 QRGRGGRGGPAGGRGQRQNMR---YNAAAAMPMPPMPAEAANPMA---ILASQLSAAAPD 506
Query: 281 EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+Q+ +LGE L+PLI+ A KITGMLLE+D SE+LH++E ++L +KV EA+AVL
Sbjct: 507 QQRMILGEALYPLIESKDAANAAKITGMLLEMDQSEVLHLIESPDALTSKVQEALAVL 564
>UniRef50_Q9ZQA8 Cluster: Probable polyadenylate-binding protein
At2g36660 (Poly(A)-binding protein At2g36660); n=1;
Arabidopsis thaliana|Rep: Probable polyadenylate-binding
protein At2g36660 (Poly(A)-binding protein At2g36660) -
Arabidopsis thaliana (Mouse-ear cress)
Length = 609
Score = 67.3 bits (157), Expect = 2e-10
Identities = 32/57 (56%), Positives = 42/57 (73%)
Frame = +2
Query: 284 QKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+ Q+LGE L PL++++ P LA KITGMLLE+D SELL +L+ E L +VDEA VL
Sbjct: 525 EMQLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVL 581
>UniRef50_UPI0000D56085 Cluster: PREDICTED: similar to CG9484-PA; n=1;
Tribolium castaneum|Rep: PREDICTED: similar to CG9484-PA
- Tribolium castaneum
Length = 2849
Score = 65.3 bits (152), Expect = 8e-10
Identities = 28/56 (50%), Positives = 44/56 (78%)
Frame = +2
Query: 287 KQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+Q LG+RL+P + +HP+ AG+ITGMLLE+ ++LL +L +SL+AKV+EAV ++
Sbjct: 2468 QQQLGDRLYPKVYNLHPNFAGRITGMLLELSPAQLLLLLASEDSLRAKVEEAVEMI 2523
>UniRef50_O95071 Cluster: E3 ubiquitin-protein ligase EDD1; n=30;
Euteleostomi|Rep: E3 ubiquitin-protein ligase EDD1 - Homo
sapiens (Human)
Length = 2799
Score = 63.3 bits (147), Expect = 3e-09
Identities = 29/56 (51%), Positives = 42/56 (75%)
Frame = +2
Query: 287 KQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+Q LGERL+P +Q M P A KITGMLLE+ ++LL +L +SL+A+VDEA+ ++
Sbjct: 2394 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELI 2449
>UniRef50_Q9LT82 Cluster: Poly(A)-binding protein-like; n=1;
Arabidopsis thaliana|Rep: Poly(A)-binding protein-like -
Arabidopsis thaliana (Mouse-ear cress)
Length = 103
Score = 58.0 bits (134), Expect = 1e-07
Identities = 25/59 (42%), Positives = 41/59 (69%)
Frame = +2
Query: 278 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+EQ+ ++GE LF +++ + P A KITGM+LE+D ++LH+L ++ K V EA+ VL
Sbjct: 29 KEQRDLIGETLFFMVEELEPQFAPKITGMILELDQDKVLHLLVTPKAFKEMVKEAMEVL 87
>UniRef50_UPI00015B526D Cluster: PREDICTED: similar to
ubiquitin-protein ligase; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ubiquitin-protein ligase - Nasonia
vitripennis
Length = 2841
Score = 55.2 bits (127), Expect = 8e-07
Identities = 26/56 (46%), Positives = 40/56 (71%)
Frame = +2
Query: 287 KQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+Q LG+RL+P + + P A KITGMLLE++ ++LL +L ESL+ KV+EA ++
Sbjct: 2446 QQQLGDRLYPKVYALRPTHAEKITGMLLEMNPAQLLMLLASEESLRQKVEEAFELI 2501
>UniRef50_A2YEJ3 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 276
Score = 54.0 bits (124), Expect = 2e-06
Identities = 24/54 (44%), Positives = 42/54 (77%)
Frame = +2
Query: 293 MLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+L + LFPL++++ + A K+TGMLLE+D +E+L+++E ++L+ KV EA+ VL
Sbjct: 192 ILADMLFPLVEQLVNEKAYKVTGMLLELDKTEVLNLVESPDTLRDKVAEAMKVL 245
>UniRef50_P51592 Cluster: E3 ubiquitin-protein ligase hyd; n=14;
Diptera|Rep: E3 ubiquitin-protein ligase hyd - Drosophila
melanogaster (Fruit fly)
Length = 2885
Score = 54.0 bits (124), Expect = 2e-06
Identities = 25/55 (45%), Positives = 38/55 (69%)
Frame = +2
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
Q +GERL+P I ++ A KITGMLLEI +LL ++ E+L+ KV+EA+ ++
Sbjct: 2502 QQIGERLYPKIHSINQTHAPKITGMLLEIPTPQLLSVISSDETLRQKVNEAIEII 2556
>UniRef50_Q178F7 Cluster: Ubiquitin-protein ligase; n=1; Aedes
aegypti|Rep: Ubiquitin-protein ligase - Aedes aegypti
(Yellowfever mosquito)
Length = 2833
Score = 53.6 bits (123), Expect = 3e-06
Identities = 24/56 (42%), Positives = 41/56 (73%)
Frame = +2
Query: 287 KQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+Q LGERL+P +Q ++ + A KITGMLL++ +++L +L ESL+ K +EA+ ++
Sbjct: 2448 QQQLGERLYPKVQALYQNNAPKITGMLLDLPATQILMLLASEESLRQKANEALEMI 2503
>UniRef50_Q54BM2 Cluster: RNA-binding region-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: RNA-binding
region-containing protein - Dictyostelium discoideum AX4
Length = 565
Score = 52.8 bits (121), Expect = 4e-06
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +2
Query: 281 EQKQMLGERLFPLIQRMHPDLAGKITGMLLE-IDNSELLHMLEHGESLKAKVDEAVAVL 454
+Q LGE L+PLI PDLAGKITGMLL+ + EL + + + L K+ EA+ VL
Sbjct: 504 QQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLADKIREALEVL 562
>UniRef50_O96606 Cluster: Polyadenylate-binding protein 1; n=6;
Trypanosomatidae|Rep: Polyadenylate-binding protein 1 -
Leishmania major
Length = 560
Score = 52.0 bits (119), Expect = 8e-06
Identities = 26/59 (44%), Positives = 37/59 (62%)
Frame = +2
Query: 278 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QEQ+ LG+RLF + + PD+A KITGM LE+ E +L + L+ +V EA+ VL
Sbjct: 496 QEQRAALGDRLFLKVYEIPPDVAPKITGMFLEMKPKEAYELLNDQKRLEERVTEALCVL 554
>UniRef50_UPI0000E4A36C Cluster: PREDICTED: similar to zinc finger,
SWIM domain containing 2; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to zinc finger, SWIM
domain containing 2 - Strongylocentrotus purpuratus
Length = 972
Score = 50.8 bits (116), Expect = 2e-05
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +2
Query: 281 EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+ KQ+LGE LF + +H +ITGMLLE N +++ MLE L+ +++ A+ V+
Sbjct: 781 DTKQVLGEHLFAKVSELHDGKTDRITGMLLEAKNEDVMRMLEDATFLRRRIEGALRVI 838
Score = 44.0 bits (99), Expect = 0.002
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +2
Query: 287 KQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
K+ +GE LF L+ ++ P KITGMLLE+D + +L L+ V ++++ L
Sbjct: 848 KEQIGEELFTLVSKIEPIQCAKITGMLLELDVKVICRLLTSPSELRQAVQKSLSSL 903
Score = 34.7 bits (76), Expect = 1.3
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 284 QKQMLGERLFPLI-QRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKV 433
+++ +GE L+ L+ R + A KITGMLLE+ +++L M++ L+ +
Sbjct: 909 RREEMGEHLYGLVASRYTEESAAKITGMLLEMSDTQLHQMMQDKTFLEENI 959
>UniRef50_Q4TBX5 Cluster: Chromosome undetermined SCAF7082, whole
genome shotgun sequence; n=3; Clupeocephala|Rep:
Chromosome undetermined SCAF7082, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 216
Score = 49.2 bits (112), Expect = 6e-05
Identities = 26/58 (44%), Positives = 34/58 (58%)
Frame = +2
Query: 281 EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
E + LGE+L+ ++ H D AGKITGMLLE+ L ML SL VD+A+ L
Sbjct: 5 EDLETLGEKLYTILYPKHKDNAGKITGMLLELPVPVLNQMLRDEASLATAVDKALGAL 62
Score = 45.6 bits (103), Expect = 7e-04
Identities = 23/58 (39%), Positives = 36/58 (62%)
Frame = +2
Query: 281 EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
E K+ LG+++F L++ + P A ITGMLLE+D + L ++ + L A V +A A L
Sbjct: 155 EDKEGLGDKIFSLVEELDPLYANDITGMLLEMDQAALRQLICDRKMLDAAVRKAQAAL 212
Score = 39.1 bits (87), Expect = 0.059
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +2
Query: 296 LGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
LGE+LF L+ + + KITGMLLE + +L +L + L+ +V+ A+ +L
Sbjct: 86 LGEQLFELVDIHNTGYSQKITGMLLEQNKDAVLQLLSDPKLLEEQVNSALRIL 138
>UniRef50_A7SCP7 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 346
Score = 48.8 bits (111), Expect = 7e-05
Identities = 22/55 (40%), Positives = 36/55 (65%)
Frame = +2
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
Q LG+R++ +Q+++P LA ++TGMLLE+ +L H+L+ E L + A VL
Sbjct: 79 QSLGDRVYGTVQQLYPTLAERVTGMLLEMPADQLNHLLDSREGLLEHIHTAAHVL 133
Score = 41.1 bits (92), Expect = 0.015
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +2
Query: 281 EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHML 403
EQK+ +GE++ I+++HP A ITGMLLE+ +LL+ +
Sbjct: 288 EQKEFIGEKIHDEIRKLHPGHADVITGMLLEMGVDQLLNTI 328
Score = 36.7 bits (81), Expect = 0.31
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +2
Query: 278 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
++ K ++GE ++ + +P A KITGMLLE++ L + + + L + EAV L
Sbjct: 174 EDLKSIIGENIYSQLVEKYPKDADKITGMLLEMELDLLQKVSQDPDLLGQRATEAVETL 232
Score = 35.5 bits (78), Expect = 0.72
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +2
Query: 296 LGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
LG +++ ++ ++P+ A KITGMLL+ E+ +L + L ++ A ++L
Sbjct: 15 LGAKIYDVVFEIYPNEADKITGMLLDGGEEEVASLLSDEKRLNERIIAAASLL 67
>UniRef50_A7NTZ5 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 244
Score = 46.8 bits (106), Expect = 3e-04
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +2
Query: 332 HPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
H D A +TGMLLE+D +E+LH+LE E+LK+KV EA+ VL
Sbjct: 179 HTDKA-VLTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVL 218
>UniRef50_Q4QA88 Cluster: Poly(A)-binding protein, putative; n=3;
Leishmania|Rep: Poly(A)-binding protein, putative -
Leishmania major
Length = 544
Score = 46.8 bits (106), Expect = 3e-04
Identities = 25/59 (42%), Positives = 35/59 (59%)
Frame = +2
Query: 278 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
++QK LGE L+ I + A KITGMLLE+ E+ +L +L +K+ EA AVL
Sbjct: 480 EQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILADHFALLSKIQEANAVL 538
>UniRef50_A5BL38 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 433
Score = 45.6 bits (103), Expect = 7e-04
Identities = 18/42 (42%), Positives = 30/42 (71%)
Frame = +2
Query: 281 EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLE 406
+Q+ MLGE L+PL+ ++ ++A K+ G LE+D +E LH+ E
Sbjct: 388 QQRTMLGESLYPLLDQLENEMAVKVIGPFLEVDQTEGLHLFE 429
>UniRef50_A7TSM7 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 264
Score = 43.6 bits (98), Expect = 0.003
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 278 QEQKQMLGERLFPLIQRMHPD--LAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVA 448
Q+Q+Q LGE L+ + D AGKITGM+L++ E++ +LE+ E + EA A
Sbjct: 189 QKQRQALGEELYKKVSAKTSDEEAAGKITGMILDLPPQEVMPLLENNELFEQHFKEAFA 247
>UniRef50_Q6CG61 Cluster: Similar to sp|P31209 Schizosaccharomyces
pombe Polyadenylate-binding protein; n=1; Yarrowia
lipolytica|Rep: Similar to sp|P31209 Schizosaccharomyces
pombe Polyadenylate-binding protein - Yarrowia
lipolytica (Candida lipolytica)
Length = 589
Score = 43.2 bits (97), Expect = 0.004
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Frame = +2
Query: 278 QEQKQMLGERLFPLIQRMHP------DLAGKITGMLLEIDNSELLHMLEHGESLKAKVDE 439
Q K+++GE L+P++QR HP D +TG++L+ DN+++L LE + L ++ +
Sbjct: 508 QAAKEIVGETLYPIVQR-HPAIGKDADTTAHVTGIMLQHDNADILSWLEDEQLLNKRIQQ 566
Query: 440 A 442
A
Sbjct: 567 A 567
>UniRef50_P04147 Cluster: Polyadenylate-binding protein, cytoplasmic
and nuclear (Poly(A)- binding protein); n=14;
Dikarya|Rep: Polyadenylate-binding protein, cytoplasmic
and nuclear (Poly(A)- binding protein) - Saccharomyces
cerevisiae (Baker's yeast)
Length = 577
Score = 41.5 bits (93), Expect = 0.011
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 278 QEQKQMLGERLFPLI--QRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVA 448
Q+Q+Q LGE+L+ + + + + AGKITGM+L++ E+ +LE E + EA A
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASA 561
>UniRef50_A6XGR1 Cluster: PolyA-binding protein; n=1; Polytomella
parva|Rep: PolyA-binding protein - Polytomella parva
Length = 362
Score = 40.3 bits (90), Expect = 0.025
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Frame = +2
Query: 104 QGVAGTAGSIRAPLV-TQSSRPAGYKYTANMRNPPAPQPAVHIQGQ---EXXXXXXXXXX 271
QG +++AP V ++ PA A + AP P V G E
Sbjct: 210 QGGRTRQQTVQAPSVPVEAVVPAVAVAEAVPVDVAAPPPVVEEAGAVEIETFTAASLVDR 269
Query: 272 XXQEQKQMLGERLFPLIQRM--------HP--DLAGKITGMLLEIDNSELLHMLEHGESL 421
+EQK+++G +L+ IQ + +P ++ GKITGMLLE+ ELL +++ E+L
Sbjct: 270 SPEEQKRIIGNKLYLQIQNIFNTTVTTQYPLEEVCGKITGMLLEMSVDELLMVMDSNETL 329
Query: 422 KAKVDEAVAVL 454
+V A +L
Sbjct: 330 TEQVQAAHELL 340
>UniRef50_Q5C2H5 Cluster: SJCHGC03468 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03468 protein - Schistosoma
japonicum (Blood fluke)
Length = 299
Score = 36.7 bits (81), Expect = 0.31
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +2
Query: 305 RLFPLIQRM--HPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
RLF +Q + + L +ITGMLLE+ +SE +L + E+L +V+EA A++
Sbjct: 1 RLFTRVQSIVRNEHLTARITGMLLELPSSEHSVLLANEEALSNRVEEARALI 52
>UniRef50_Q23D16 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 763
Score = 35.5 bits (78), Expect = 0.72
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Frame = +2
Query: 278 QEQKQMLGERLFPLIQRMHPD----LAGKITGMLLEI---DNSELLHMLEHGESLKAKVD 436
+++KQ+LG+ L + + P+ LAGKIT +LL+ + E++ ML + + LK +
Sbjct: 692 EQKKQLLGKPLMEKVGQSLPEHQKPLAGKITNLLLDFEIYEPEEIISMLSNADELKENIG 751
Query: 437 EAVAVL 454
A+ ++
Sbjct: 752 TALELI 757
>UniRef50_UPI00004D7430 Cluster: Serologically defined colon cancer
antigen 8 (Centrosomal colon cancer autoantigen protein)
(hCCCAP) (Antigen NY-CO-8).; n=3; Xenopus
tropicalis|Rep: Serologically defined colon cancer
antigen 8 (Centrosomal colon cancer autoantigen protein)
(hCCCAP) (Antigen NY-CO-8). - Xenopus tropicalis
Length = 626
Score = 33.5 bits (73), Expect = 2.9
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Frame = +3
Query: 81 EQDQSQDNKVLLARLDQSVH-LLLLKAAVQLVINTLQI-CEILQLRSLQFTYRARNH*RL 254
EQ+ Q + + A+ DQ V+ ++LL A+ +I+ L+ C +L + T R R+ ++
Sbjct: 477 EQELKQKMQQMEAQHDQMVNEMVLLMASQNTLISRLKKECNVLAKQLEHVTERNRSDVQV 536
Query: 255 LC*LQPHFKNRSKCLVKGFSHSFKECIQ 338
+C H NR + L+K +CIQ
Sbjct: 537 ICHENVHAHNRIEELLKREDELEAQCIQ 564
>UniRef50_Q23MM3 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 478
Score = 33.1 bits (72), Expect = 3.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 46 SSNTGCITYFSRSKTNHRTTRCCWHGWINPCTSCYS 153
S++T C+ Y+ + ++C G +N CTSC S
Sbjct: 350 SNSTSCVEYYQDIPCYYTCSQCSMPGSVNSCTSCIS 385
>UniRef50_Q2RMP5 Cluster: Putative uncharacterized protein; n=1;
Rhodospirillum rubrum ATCC 11170|Rep: Putative
uncharacterized protein - Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255)
Length = 209
Score = 32.3 bits (70), Expect = 6.8
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 311 FPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESL 421
F ++ + HPD A KI + I SE LH +E+GE++
Sbjct: 175 FAILDQFHPDAAPKIRDLSRRI--SEALHFIENGENI 209
>UniRef50_A6EVH2 Cluster: Lipoprotein, putative; n=1; Marinobacter
algicola DG893|Rep: Lipoprotein, putative - Marinobacter
algicola DG893
Length = 289
Score = 32.3 bits (70), Expect = 6.8
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 287 KQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAV 451
+++ GER ++ +AG +T +L + D L H+LE E+++ D V
Sbjct: 226 EEVRGERYQQMMSDSRAAMAGLMTDLLQQADQRHLDHLLEQAENMRGDFDTLACV 280
>UniRef50_UPI0000E2189C Cluster: PREDICTED: similar to phogrin; n=2;
Pan troglodytes|Rep: PREDICTED: similar to phogrin - Pan
troglodytes
Length = 1363
Score = 31.9 bits (69), Expect = 8.9
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 77 LGARPITGQQGVAGTAGSIRAPLVTQSSRPAGYKYTANMRNPPAPQPAVHIQ 232
L + + G++G+ G A RAPL + SRP A +P AP+P ++
Sbjct: 768 LAGKVVRGRRGLGGCA---RAPLASARSRPGRELPEATRGSPAAPRPGPQVR 816
>UniRef50_A7RV65 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1514
Score = 31.9 bits (69), Expect = 8.9
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +2
Query: 80 GARPITGQQGVAGTAGSIRAPLVTQSSRPAGYKYTANMRNPPAPQPAVHIQGQ 238
GAR ITG QG G+ G+ AP P G + R PP P+ + I G+
Sbjct: 471 GARGITGPQGETGSDGAQGAPGEGGLQGPIGLQ---GQRGPPGPKGSRGIAGE 520
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,573,683
Number of Sequences: 1657284
Number of extensions: 9093801
Number of successful extensions: 25761
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 24798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25742
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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