Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A05
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    62   4e-11
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    28   0.72 
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   3.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   3.8  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   6.7  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 62.5 bits (145), Expect = 4e-11
 Identities = 30/59 (50%), Positives = 42/59 (71%)
 Frame = +2

Query: 278 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
           + +KQ+LGE L+P +      L+GKITGMLLE+ NSELL +LE   +L  +V+EA+ VL
Sbjct: 583 ESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVL 641


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 15  ICNHP-TVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHLLLLKAAVQLVINTLQI 191
           +C+   TVL Q    R+  +L+  +      ++ L+ ++   HLL L   V  VI T   
Sbjct: 131 VCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHLLRLVEQVNAVIGTFYT 190

Query: 192 CEILQL 209
            E++QL
Sbjct: 191 GELMQL 196


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 320 IQRMHPDLAGKITGMLLEID-NSELLHMLEHGESLKAKVDEAV 445
           +QR++P    ++ G LL+ID + EL+  L      +  VDE V
Sbjct: 801 VQRINPSKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDELV 843


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +2

Query: 86  RPITGQQGVAGTAGSIRAPLVTQSSRPAGYKYTANMRNPPAPQP 217
           RPI           + + PL   SSR +     AN + PP P P
Sbjct: 273 RPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP 316


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +2

Query: 83  ARPITGQQGVAGTA----GSIRAPLVTQSSRPAGYKYTANMRNPPAPQ 214
           A P  G  G+  ++    GSIR+P +T +S  A    T N+    A Q
Sbjct: 327 ANPAYGSTGIRSSSIPSSGSIRSPSLTTTSAQATTNATNNITTTTAAQ 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,384
Number of Sequences: 5004
Number of extensions: 37852
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)