Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A05
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943... 76 1e-14
09_01_0079 - 1159963-1160211,1160303-1160509,1160631-1160801,116... 72 2e-13
08_02_0163 + 13470178-13470335,13470635-13470656,13470885-134710... 71 7e-13
04_04_0435 - 25170348-25170593,25170989-25171189,25171580-251717... 68 4e-12
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549... 62 2e-10
08_01_0181 + 1530623-1531626,1531723-1531902,1531998-1532177,153... 31 0.42
12_01_0144 - 1097579-1097604,1097940-1098127,1098567-1098720,109... 30 1.3
11_04_0450 - 17847676-17847841,17848024-17848131,17848223-178483... 28 3.9
11_03_0206 + 11655132-11655232,11655433-11655823 28 3.9
01_07_0264 - 42388455-42388565,42388656-42388688,42388792-423889... 28 3.9
12_02_0063 + 13098519-13099585,13099759-13099906 27 6.8
11_01_0142 - 1169007-1169032,1169351-1169538,1169978-1170131,117... 27 6.8
08_02_0316 + 15690452-15690555,15690871-15690965,15693707-156937... 27 8.9
>03_02_0555 +
9431451-9431688,9432685-9432803,9432886-9433079,
9433174-9433430,9433544-9433650,9433715-9433888,
9434359-9434490,9434776-9434955,9435062-9435265
Length = 534
Score = 76.2 bits (179), Expect = 1e-14
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = +2
Query: 278 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+EQK MLG RL+PL++R HPDLA KITGMLLE+ NSE++ +L L AK++E V +L
Sbjct: 449 EEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLL 507
>09_01_0079 -
1159963-1160211,1160303-1160509,1160631-1160801,
1161732-1161869,1162184-1162273,1162354-1162431,
1162510-1163166,1163245-1163363,1164305-1164584
Length = 662
Score = 72.1 bits (169), Expect = 2e-13
Identities = 32/58 (55%), Positives = 46/58 (79%)
Frame = +2
Query: 281 EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+Q+ MLGE L+PL+ ++ + A K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL
Sbjct: 577 QQRMMLGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 634
>08_02_0163 +
13470178-13470335,13470635-13470656,13470885-13471055,
13471157-13471363,13471458-13471700
Length = 266
Score = 70.5 bits (165), Expect = 7e-13
Identities = 31/58 (53%), Positives = 46/58 (79%)
Frame = +2
Query: 281 EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+Q+ MLGE L+PL+ ++ D A K+TGMLLE+D +E+LH++E ++LKAKV EA+ VL
Sbjct: 183 QQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAKVAEAMEVL 240
>04_04_0435 -
25170348-25170593,25170989-25171189,25171580-25171756,
25172284-25172418,25173131-25173262,25173292-25173369,
25173452-25174108,25174210-25174328,25175897-25176173
Length = 673
Score = 68.1 bits (159), Expect = 4e-12
Identities = 30/59 (50%), Positives = 47/59 (79%)
Frame = +2
Query: 278 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LE E+LK+KV EA+ VL
Sbjct: 588 EQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVL 646
>06_03_0614 -
22753092-22753349,22754059-22754277,22754712-22754960,
22755186-22755275,22755379-22755456,22755562-22756337,
22757042-22757384
Length = 670
Score = 62.5 bits (145), Expect = 2e-10
Identities = 28/80 (35%), Positives = 51/80 (63%)
Frame = +2
Query: 215 PAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELL 394
P +Q ++Q+++LG+ LFPL++++ + A K+TGMLLE+D +E+L
Sbjct: 560 PVGELQAPSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVL 619
Query: 395 HMLEHGESLKAKVDEAVAVL 454
+++E ++L+ KV EA+ VL
Sbjct: 620 NLVESPDTLRDKVAEAMKVL 639
>08_01_0181 +
1530623-1531626,1531723-1531902,1531998-1532177,
1532363-1532442,1532528-1532701,1533001-1533118,
1533223-1533301
Length = 604
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +2
Query: 311 FPLIQRMHPDLAGKITGMLL--EIDNSELLHMLEHGE-SLKAKVDEAVAVL 454
F +QR+ P+ GKI G++L E D EL+ + E +L AK+++ A L
Sbjct: 11 FARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAAL 61
>12_01_0144 -
1097579-1097604,1097940-1098127,1098567-1098720,
1098825-1099092,1099310-1099550,1099669-1099833,
1099898-1100298
Length = 480
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 308 LFPLIQRMHPDLAGKITGMLLEIDNSEL 391
+F +Q + P+LA I GMLL DN+E+
Sbjct: 10 VFARLQALEPNLAPNIIGMLLTKDNNEM 37
>11_04_0450 -
17847676-17847841,17848024-17848131,17848223-17848377,
17848471-17848560,17848650-17848748,17848862-17848928,
17849028-17849124,17849357-17849492,17849579-17849634,
17849718-17849801,17849909-17850125
Length = 424
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 358 SYFTSQIWMHSLNEWEKPFTKHLLLFLKWGC 266
SYF+ + S + F K LLLFLKW C
Sbjct: 248 SYFSQAHYCLSGCDTSDSFGKKLLLFLKWKC 278
>11_03_0206 + 11655132-11655232,11655433-11655823
Length = 163
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 116 GTAGSIRAPLVTQSSRPAGYKYTANMRNPPAPQPAVH 226
G + SI L SSR + + +NPP P+PA+H
Sbjct: 48 GCSASITLCLGLPSSRAHACRAVPDGQNPPNPRPALH 84
>01_07_0264 -
42388455-42388565,42388656-42388688,42388792-42388905,
42389011-42389100,42389173-42389268,42389363-42389404,
42389498-42389608,42392258-42392440,42392518-42392961
Length = 407
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -2
Query: 472 FSLMGLQHSYCFIHFGLQRFSML*HMKKLRIVNF*KHTSYFTSQIW 335
F + + ++C + GL +F+ + ++ LR ++ K YF +IW
Sbjct: 270 FQALKIATNFCHMTVGLAQFAYMEYVWDLREISRLKEWPYFLHEIW 315
>12_02_0063 + 13098519-13099585,13099759-13099906
Length = 404
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +2
Query: 74 SLGARPITGQQGVAGTAGSIRAPLVTQSSRPAGYKYTANMRNPPAPQPAV 223
++ A+P+ Q V +A R + P Y + PPAP +V
Sbjct: 233 AVSAKPMAPQSSVTASAAPPRCAVAPSQHHPPFQTYPTDPFEPPAPAASV 282
>11_01_0142 -
1169007-1169032,1169351-1169538,1169978-1170131,
1170565-1170656,1170782-1170961,1171080-1171244,
1171309-1171709
Length = 401
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 308 LFPLIQRMHPDLAGKITGMLLEIDNSEL 391
+F +Q + P+LA I GMLL D +E+
Sbjct: 10 VFARLQALEPNLAPNIIGMLLTKDKNEM 37
>08_02_0316 +
15690452-15690555,15690871-15690965,15693707-15693783,
15693854-15693908,15695158-15695227,15695388-15695457,
15696047-15696340
Length = 254
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 344 AGKITGMLLEIDNSELLHML 403
AGK+ MLL +D EL+H L
Sbjct: 30 AGKVERMLLVVDQQELVHFL 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,966,144
Number of Sequences: 37544
Number of extensions: 265613
Number of successful extensions: 753
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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