Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A05
(515 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding pro... 132 5e-31
U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding... 132 5e-31
BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein. 132 5e-31
BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein. 132 5e-31
AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein... 132 5e-31
AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein... 132 5e-31
AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein... 132 5e-31
AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protei... 132 5e-31
AL365277-13|CAI16423.1| 194|Homo sapiens poly(A) binding protei... 132 5e-31
AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein... 132 5e-31
AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein... 132 5e-31
AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein... 132 5e-31
AB208962-1|BAD92199.1| 358|Homo sapiens PABPC4 protein variant ... 132 5e-31
BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein. 132 7e-31
AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant ... 131 2e-30
Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for ... 129 7e-30
U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein p... 129 7e-30
BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein... 129 7e-30
BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein... 129 7e-30
BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein. 129 7e-30
Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding pro... 126 6e-29
AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific poly(A)... 125 8e-29
DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein. 123 4e-28
BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein... 123 4e-28
BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein... 123 4e-28
AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein... 123 4e-28
AK127880-1|BAC87174.1| 146|Homo sapiens protein ( Homo sapiens ... 114 2e-25
AL109839-10|CAI95639.1| 168|Homo sapiens chromosome 20 open rea... 106 4e-23
AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open read... 106 4e-23
AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open read... 106 4e-23
AL109839-8|CAI95637.1| 149|Homo sapiens chromosome 20 open read... 94 2e-19
AL109839-9|CAI95638.1| 171|Homo sapiens chromosome 20 open read... 93 5e-19
AL109839-7|CAI95636.1| 151|Homo sapiens chromosome 20 open read... 93 5e-19
U95000-1|AAF88143.1| 2798|Homo sapiens hyd protein protein. 63 5e-10
AF006010-1|AAD01259.2| 2799|Homo sapiens progestin induced prote... 63 5e-10
AB020703-1|BAA74919.3| 2820|Homo sapiens KIAA0896 protein protein. 63 5e-10
AL109839-6|CAI95635.1| 134|Homo sapiens chromosome 20 open read... 32 1.4
U58089-1|AAC50546.1| 577|Homo sapiens Hs-CUL-3 protein. 29 7.3
BC092409-1|AAH92409.1| 768|Homo sapiens cullin 3 protein. 29 7.3
BC039598-1|AAH39598.1| 768|Homo sapiens cullin 3 protein. 29 7.3
AY337761-1|AAQ01660.1| 744|Homo sapiens cullin 3 isoform protein. 29 7.3
AF064087-1|AAC36304.1| 768|Homo sapiens cullin 3 protein. 29 7.3
AF062537-1|AAC36682.1| 768|Homo sapiens cullin 3 protein. 29 7.3
AC073052-1|AAX93287.1| 746|Homo sapiens unknown protein. 29 7.3
AB014517-1|BAA31592.2| 786|Homo sapiens KIAA0617 protein protein. 29 7.3
AK128229-1|BAC87339.1| 679|Homo sapiens protein ( Homo sapiens ... 29 9.7
AK125938-1|BAC86351.1| 679|Homo sapiens protein ( Homo sapiens ... 29 9.7
AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3... 29 9.7
AB209175-1|BAD92412.1| 1658|Homo sapiens collagen, type V, alpha... 29 9.7
>U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding
protein protein.
Length = 644
Score = 132 bits (320), Expect = 5e-31
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 509 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 568
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 569 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 623
>U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding
protein protein.
Length = 644
Score = 132 bits (320), Expect = 5e-31
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 509 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 568
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 569 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 623
>BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 132 bits (320), Expect = 5e-31
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 525 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 584
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 585 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 639
>BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein.
Length = 631
Score = 132 bits (320), Expect = 5e-31
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 496 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 555
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 556 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 610
>AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibletaining 6 protein.
Length = 644
Score = 132 bits (320), Expect = 5e-31
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 509 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 568
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 569 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 623
>AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleseudogene protein.
Length = 660
Score = 132 bits (320), Expect = 5e-31
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 525 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 584
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 585 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 639
>AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleeudogene protein.
Length = 615
Score = 132 bits (320), Expect = 5e-31
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 480 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 539
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 540 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 594
>AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 410
Score = 132 bits (320), Expect = 5e-31
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 275 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 334
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 335 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 389
>AL365277-13|CAI16423.1| 194|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 194
Score = 132 bits (320), Expect = 5e-31
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 63 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 122
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 123 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 177
>AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblepeptide, antigen CD29 includes
protein.
Length = 644
Score = 132 bits (320), Expect = 5e-31
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 509 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 568
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 569 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 623
>AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducible) pseudogene protein.
Length = 660
Score = 132 bits (320), Expect = 5e-31
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 525 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 584
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 585 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 639
>AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblely, member 5 protein.
Length = 615
Score = 132 bits (320), Expect = 5e-31
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 480 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 539
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 540 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 594
>AB208962-1|BAD92199.1| 358|Homo sapiens PABPC4 protein variant
protein.
Length = 358
Score = 132 bits (320), Expect = 5e-31
Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 223 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 282
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 283 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 337
>BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 132 bits (319), Expect = 7e-31
Identities = 72/115 (62%), Positives = 81/115 (70%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R P APQPAVH+QGQE QEQK
Sbjct: 525 RAAVAAAAPRAVAPYKYASSVRGPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 584
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 585 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 639
>AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant
protein.
Length = 371
Score = 131 bits (316), Expect = 2e-30
Identities = 71/115 (61%), Positives = 81/115 (70%), Gaps = 8/115 (6%)
Frame = +2
Query: 134 RAPLVTQSSRP-AGYKYTANMRNP-------PAPQPAVHIQGQEXXXXXXXXXXXXQEQK 289
RA + + R A YKY +++R+P APQPAVH+QGQE QEQK
Sbjct: 236 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK 295
Query: 290 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
QMLGERLFPLIQ MH +LAGKITGMLLEIDNSELLHMLE ESL++KVDEA AVL
Sbjct: 296 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAAAVL 350
>Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for
polyA binding protein. ).
Length = 633
Score = 129 bits (311), Expect = 7e-30
Identities = 69/104 (66%), Positives = 73/104 (70%), Gaps = 10/104 (9%)
Frame = +2
Query: 173 YKYTANMRNPPA----------PQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLI 322
YKY A +RNP QPAVH+QGQE QEQKQMLGERLFPLI
Sbjct: 508 YKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLI 567
Query: 323 QRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
Q MHP LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 568 QAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 611
>U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein
protein.
Length = 636
Score = 129 bits (311), Expect = 7e-30
Identities = 69/104 (66%), Positives = 73/104 (70%), Gaps = 10/104 (9%)
Frame = +2
Query: 173 YKYTANMRNPPA----------PQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLI 322
YKY A +RNP QPAVH+QGQE QEQKQMLGERLFPLI
Sbjct: 511 YKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLI 570
Query: 323 QRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
Q MHP LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 571 QAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 614
>BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 129 bits (311), Expect = 7e-30
Identities = 69/104 (66%), Positives = 73/104 (70%), Gaps = 10/104 (9%)
Frame = +2
Query: 173 YKYTANMRNPPA----------PQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLI 322
YKY A +RNP QPAVH+QGQE QEQKQMLGERLFPLI
Sbjct: 511 YKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLI 570
Query: 323 QRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
Q MHP LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 571 QAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 614
>BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 129 bits (311), Expect = 7e-30
Identities = 69/104 (66%), Positives = 73/104 (70%), Gaps = 10/104 (9%)
Frame = +2
Query: 173 YKYTANMRNPPA----------PQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLI 322
YKY A +RNP QPAVH+QGQE QEQKQMLGERLFPLI
Sbjct: 511 YKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLI 570
Query: 323 QRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
Q MHP LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 571 QAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 614
>BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein.
Length = 636
Score = 129 bits (311), Expect = 7e-30
Identities = 69/104 (66%), Positives = 73/104 (70%), Gaps = 10/104 (9%)
Frame = +2
Query: 173 YKYTANMRNPPA----------PQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLI 322
YKY A +RNP QPAVH+QGQE QEQKQMLGERLFPLI
Sbjct: 511 YKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLI 570
Query: 323 QRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
Q MHP LAGKITGMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 571 QAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 614
>Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding
protein II protein.
Length = 522
Score = 126 bits (303), Expect = 6e-29
Identities = 62/82 (75%), Positives = 65/82 (79%)
Frame = +2
Query: 209 PQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSE 388
P PAVH+QGQE QEQKQMLGERLFPLIQ MHP LAGKITGMLLEIDNSE
Sbjct: 419 PHPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSE 478
Query: 389 LLHMLEHGESLKAKVDEAVAVL 454
LLHMLE ESL++KVDEAVAVL
Sbjct: 479 LLHMLESPESLRSKVDEAVAVL 500
>AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific
poly(A)-binding protein protein.
Length = 631
Score = 125 bits (302), Expect = 8e-29
Identities = 74/131 (56%), Positives = 82/131 (62%), Gaps = 11/131 (8%)
Frame = +2
Query: 95 TGQQGVAGTAGSIRAPLVTQSSRPAG-YKYTANMRNPPA---PQP-------AVHIQGQE 241
T Q V + RA T + R YKY A +RNP QP AVH+QGQE
Sbjct: 479 TSTQTVGPRPAAARAAAATPAVRTVPRYKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQE 538
Query: 242 XXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESL 421
Q+QKQMLGERLFPLIQ MHP LAGKITGMLLEIDNSELL+MLE ESL
Sbjct: 539 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESL 598
Query: 422 KAKVDEAVAVL 454
++KVDEAVAVL
Sbjct: 599 RSKVDEAVAVL 609
>DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein.
Length = 630
Score = 123 bits (296), Expect = 4e-28
Identities = 72/124 (58%), Positives = 79/124 (63%), Gaps = 10/124 (8%)
Frame = +2
Query: 113 AGTAGSIRAPLVTQSSRPAGYKYTANMRNPPA---PQP-------AVHIQGQEXXXXXXX 262
A A + P V R YKY A +RNP QP AVH+QGQE
Sbjct: 489 AAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQETLTASRL 545
Query: 263 XXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEA 442
Q+QKQMLGERLFPLIQ MHP LAGKITGMLLEIDNSELL+MLE ESL++KVDEA
Sbjct: 546 ASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEA 605
Query: 443 VAVL 454
VAVL
Sbjct: 606 VAVL 609
>BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 123 bits (296), Expect = 4e-28
Identities = 72/124 (58%), Positives = 79/124 (63%), Gaps = 10/124 (8%)
Frame = +2
Query: 113 AGTAGSIRAPLVTQSSRPAGYKYTANMRNPPA---PQP-------AVHIQGQEXXXXXXX 262
A A + P V R YKY A +RNP QP AVH+QGQE
Sbjct: 489 AAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQETLTASRL 545
Query: 263 XXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEA 442
Q+QKQMLGERLFPLIQ MHP LAGKITGMLLEIDNSELL+MLE ESL++KVDEA
Sbjct: 546 ASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEA 605
Query: 443 VAVL 454
VAVL
Sbjct: 606 VAVL 609
>BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 123 bits (296), Expect = 4e-28
Identities = 72/124 (58%), Positives = 79/124 (63%), Gaps = 10/124 (8%)
Frame = +2
Query: 113 AGTAGSIRAPLVTQSSRPAGYKYTANMRNPPA---PQP-------AVHIQGQEXXXXXXX 262
A A + P V R YKY A +RNP QP AVH+QGQE
Sbjct: 489 AAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQETLTASRL 545
Query: 263 XXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEA 442
Q+QKQMLGERLFPLIQ MHP LAGKITGMLLEIDNSELL+MLE ESL++KVDEA
Sbjct: 546 ASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEA 605
Query: 443 VAVL 454
VAVL
Sbjct: 606 VAVL 609
>AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 123 bits (296), Expect = 4e-28
Identities = 72/124 (58%), Positives = 79/124 (63%), Gaps = 10/124 (8%)
Frame = +2
Query: 113 AGTAGSIRAPLVTQSSRPAGYKYTANMRNPPA---PQP-------AVHIQGQEXXXXXXX 262
A A + P V R YKY A +RNP QP AVH+QGQE
Sbjct: 489 AAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQETLTASRL 545
Query: 263 XXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEA 442
Q+QKQMLGERLFPLIQ MHP LAGKITGMLLEIDNSELL+MLE ESL++KVDEA
Sbjct: 546 ASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEA 605
Query: 443 VAVL 454
VAVL
Sbjct: 606 VAVL 609
>AK127880-1|BAC87174.1| 146|Homo sapiens protein ( Homo sapiens
cDNA FLJ45986 fis, clone PUAEN2000594, highly similar
to Polyadenylate-binding protein 1. ).
Length = 146
Score = 114 bits (274), Expect = 2e-25
Identities = 64/104 (61%), Positives = 70/104 (67%), Gaps = 10/104 (9%)
Frame = +2
Query: 173 YKYTANMRNPP----------APQPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLI 322
YKY A + NP QPA+H+QGQE QEQKQMLGE LFPLI
Sbjct: 22 YKYAAGVCNPQQHLNAQPQVTVQQPAIHVQGQEPLTVSMLASAP-QEQKQMLGEWLFPLI 80
Query: 323 QRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
Q MHP LAGKITG+LLEIDNSELLHML+ ESL +KVDEAVAVL
Sbjct: 81 QAMHPTLAGKITGVLLEIDNSELLHMLKSPESLHSKVDEAVAVL 124
>AL109839-10|CAI95639.1| 168|Homo sapiens chromosome 20 open
reading frame 119 protein.
Length = 168
Score = 106 bits (255), Expect = 4e-23
Identities = 54/81 (66%), Positives = 59/81 (72%)
Frame = +2
Query: 212 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSEL 391
+PAVHI GQE EQKQM+GERL+PLI +H LAGKITGMLLEIDNSEL
Sbjct: 74 EPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSEL 133
Query: 392 LHMLEHGESLKAKVDEAVAVL 454
L MLE ESL AK+DEAVAVL
Sbjct: 134 LLMLESPESLHAKIDEAVAVL 154
>AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 106 bits (255), Expect = 4e-23
Identities = 54/81 (66%), Positives = 59/81 (72%)
Frame = +2
Query: 212 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSEL 391
+PAVHI GQE EQKQM+GERL+PLI +H LAGKITGMLLEIDNSEL
Sbjct: 520 EPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSEL 579
Query: 392 LHMLEHGESLKAKVDEAVAVL 454
L MLE ESL AK+DEAVAVL
Sbjct: 580 LLMLESPESLHAKIDEAVAVL 600
>AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 106 bits (255), Expect = 4e-23
Identities = 54/81 (66%), Positives = 59/81 (72%)
Frame = +2
Query: 212 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSEL 391
+PAVHI GQE EQKQM+GERL+PLI +H LAGKITGMLLEIDNSEL
Sbjct: 520 EPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSEL 579
Query: 392 LHMLEHGESLKAKVDEAVAVL 454
L MLE ESL AK+DEAVAVL
Sbjct: 580 LLMLESPESLHAKIDEAVAVL 600
>AL109839-8|CAI95637.1| 149|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 149
Score = 94.3 bits (224), Expect = 2e-19
Identities = 47/74 (63%), Positives = 52/74 (70%)
Frame = +2
Query: 212 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSEL 391
+PAVHI GQE EQKQM+GERL+PLI +H LAGKITGMLLEIDNSEL
Sbjct: 74 EPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSEL 133
Query: 392 LHMLEHGESLKAKV 433
L MLE ESL AK+
Sbjct: 134 LLMLESPESLHAKI 147
>AL109839-9|CAI95638.1| 171|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 171
Score = 93.1 bits (221), Expect = 5e-19
Identities = 47/73 (64%), Positives = 51/73 (69%)
Frame = +2
Query: 212 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSEL 391
+PAVHI GQE EQKQM+GERL+PLI +H LAGKITGMLLEIDNSEL
Sbjct: 74 EPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSEL 133
Query: 392 LHMLEHGESLKAK 430
L MLE ESL AK
Sbjct: 134 LLMLESPESLHAK 146
>AL109839-7|CAI95636.1| 151|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 151
Score = 93.1 bits (221), Expect = 5e-19
Identities = 47/73 (64%), Positives = 51/73 (69%)
Frame = +2
Query: 212 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSEL 391
+PAVHI GQE EQKQM+GERL+PLI +H LAGKITGMLLEIDNSEL
Sbjct: 55 EPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSEL 114
Query: 392 LHMLEHGESLKAK 430
L MLE ESL AK
Sbjct: 115 LLMLESPESLHAK 127
>U95000-1|AAF88143.1| 2798|Homo sapiens hyd protein protein.
Length = 2798
Score = 63.3 bits (147), Expect = 5e-10
Identities = 29/56 (51%), Positives = 42/56 (75%)
Frame = +2
Query: 287 KQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+Q LGERL+P +Q M P A KITGMLLE+ ++LL +L +SL+A+VDEA+ ++
Sbjct: 2393 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELI 2448
>AF006010-1|AAD01259.2| 2799|Homo sapiens progestin induced protein
protein.
Length = 2799
Score = 63.3 bits (147), Expect = 5e-10
Identities = 29/56 (51%), Positives = 42/56 (75%)
Frame = +2
Query: 287 KQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+Q LGERL+P +Q M P A KITGMLLE+ ++LL +L +SL+A+VDEA+ ++
Sbjct: 2394 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELI 2449
>AB020703-1|BAA74919.3| 2820|Homo sapiens KIAA0896 protein protein.
Length = 2820
Score = 63.3 bits (147), Expect = 5e-10
Identities = 29/56 (51%), Positives = 42/56 (75%)
Frame = +2
Query: 287 KQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+Q LGERL+P +Q M P A KITGMLLE+ ++LL +L +SL+A+VDEA+ ++
Sbjct: 2416 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELI 2471
>AL109839-6|CAI95635.1| 134|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 134
Score = 31.9 bits (69), Expect = 1.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 212 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLG 301
+PAVHI GQE EQKQM+G
Sbjct: 15 EPAVHIPGQEPLTASMLAAAPLHEQKQMIG 44
>U58089-1|AAC50546.1| 577|Homo sapiens Hs-CUL-3 protein.
Length = 577
Score = 29.5 bits (63), Expect = 7.3
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +2
Query: 314 PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGES 418
P+++ + +L K ++E++NS L+HML++G++
Sbjct: 68 PIVKVVERELISKHMKTIVEMENSGLVHMLKNGKT 102
>BC092409-1|AAH92409.1| 768|Homo sapiens cullin 3 protein.
Length = 768
Score = 29.5 bits (63), Expect = 7.3
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +2
Query: 314 PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGES 418
P+++ + +L K ++E++NS L+HML++G++
Sbjct: 259 PIVKVVERELISKHMKTIVEMENSGLVHMLKNGKT 293
>BC039598-1|AAH39598.1| 768|Homo sapiens cullin 3 protein.
Length = 768
Score = 29.5 bits (63), Expect = 7.3
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +2
Query: 314 PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGES 418
P+++ + +L K ++E++NS L+HML++G++
Sbjct: 259 PIVKVVERELISKHMKTIVEMENSGLVHMLKNGKT 293
>AY337761-1|AAQ01660.1| 744|Homo sapiens cullin 3 isoform protein.
Length = 744
Score = 29.5 bits (63), Expect = 7.3
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +2
Query: 314 PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGES 418
P+++ + +L K ++E++NS L+HML++G++
Sbjct: 235 PIVKVVERELISKHMKTIVEMENSGLVHMLKNGKT 269
>AF064087-1|AAC36304.1| 768|Homo sapiens cullin 3 protein.
Length = 768
Score = 29.5 bits (63), Expect = 7.3
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +2
Query: 314 PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGES 418
P+++ + +L K ++E++NS L+HML++G++
Sbjct: 259 PIVKVVERELISKHMKTIVEMENSGLVHMLKNGKT 293
>AF062537-1|AAC36682.1| 768|Homo sapiens cullin 3 protein.
Length = 768
Score = 29.5 bits (63), Expect = 7.3
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +2
Query: 314 PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGES 418
P+++ + +L K ++E++NS L+HML++G++
Sbjct: 259 PIVKVVERELISKHMKTIVEMENSGLVHMLKNGKT 293
>AC073052-1|AAX93287.1| 746|Homo sapiens unknown protein.
Length = 746
Score = 29.5 bits (63), Expect = 7.3
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +2
Query: 314 PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGES 418
P+++ + +L K ++E++NS L+HML++G++
Sbjct: 237 PIVKVVERELISKHMKTIVEMENSGLVHMLKNGKT 271
>AB014517-1|BAA31592.2| 786|Homo sapiens KIAA0617 protein protein.
Length = 786
Score = 29.5 bits (63), Expect = 7.3
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +2
Query: 314 PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGES 418
P+++ + +L K ++E++NS L+HML++G++
Sbjct: 277 PIVKVVERELISKHMKTIVEMENSGLVHMLKNGKT 311
>AK128229-1|BAC87339.1| 679|Homo sapiens protein ( Homo sapiens
cDNA FLJ46362 fis, clone TESTI4050293. ).
Length = 679
Score = 29.1 bits (62), Expect = 9.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 284 QKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESL 421
+ QML + L+QR H TGM L +DN +L H + +
Sbjct: 451 KNQMLSQ--LKLVQRKHSQPQSHFTGMSLALDNLSSKDLLTHAQGI 494
>AK125938-1|BAC86351.1| 679|Homo sapiens protein ( Homo sapiens
cDNA FLJ43950 fis, clone TESTI4015293. ).
Length = 679
Score = 29.1 bits (62), Expect = 9.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 284 QKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESL 421
+ QML + L+QR H TGM L +DN +L H + +
Sbjct: 451 KNQMLSQ--LKLVQRKHSQPQSHFTGMSLALDNLSSKDLLTHAQGI 494
>AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3
chain protein.
Length = 1745
Score = 29.1 bits (62), Expect = 9.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 77 LGARPITGQQGVAGTAGSIRAPLVTQSSRP---AGYKYTANMRNPPAP 211
+GA G++G G AG I P + S P AG K + R PP P
Sbjct: 1003 VGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGP 1050
>AB209175-1|BAD92412.1| 1658|Homo sapiens collagen, type V, alpha 3
preproprotein variant protein.
Length = 1658
Score = 29.1 bits (62), Expect = 9.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 77 LGARPITGQQGVAGTAGSIRAPLVTQSSRP---AGYKYTANMRNPPAP 211
+GA G++G G AG I P + S P AG K + R PP P
Sbjct: 916 VGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSPGERGPPGP 963
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,821,004
Number of Sequences: 237096
Number of extensions: 1531437
Number of successful extensions: 4009
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 3616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3992
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -