Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A05
(515 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 84 7e-17
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 84 7e-17
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 84 7e-17
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 84 7e-17
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 81 5e-16
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein... 28 4.6
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 83.8 bits (198), Expect = 7e-17
Identities = 51/116 (43%), Positives = 66/116 (56%), Gaps = 9/116 (7%)
Frame = +2
Query: 134 RAPLVTQSSRPAGYKYTANMRNPPAPQPA-------VHIQGQEXXXXXXXXXXXXQEQKQ 292
R P Q RPA + PP P A + I GQE QEQKQ
Sbjct: 529 RPPQQQQQQRPA----PTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQ 584
Query: 293 MLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+LGER++ LI++++P AGKITGM+LEIDNSEL+ ML+ E ++KVDEA +VL
Sbjct: 585 LLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 640
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 83.8 bits (198), Expect = 7e-17
Identities = 51/116 (43%), Positives = 66/116 (56%), Gaps = 9/116 (7%)
Frame = +2
Query: 134 RAPLVTQSSRPAGYKYTANMRNPPAPQPA-------VHIQGQEXXXXXXXXXXXXQEQKQ 292
R P Q RPA + PP P A + I GQE QEQKQ
Sbjct: 469 RPPQQQQQQRPA----PTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQ 524
Query: 293 MLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+LGER++ LI++++P AGKITGM+LEIDNSEL+ ML+ E ++KVDEA +VL
Sbjct: 525 LLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 580
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 83.8 bits (198), Expect = 7e-17
Identities = 51/116 (43%), Positives = 66/116 (56%), Gaps = 9/116 (7%)
Frame = +2
Query: 134 RAPLVTQSSRPAGYKYTANMRNPPAPQPA-------VHIQGQEXXXXXXXXXXXXQEQKQ 292
R P Q RPA + PP P A + I GQE QEQKQ
Sbjct: 466 RPPQQQQQQRPA----PTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQ 521
Query: 293 MLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+LGER++ LI++++P AGKITGM+LEIDNSEL+ ML+ E ++KVDEA +VL
Sbjct: 522 LLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 577
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 83.8 bits (198), Expect = 7e-17
Identities = 51/116 (43%), Positives = 66/116 (56%), Gaps = 9/116 (7%)
Frame = +2
Query: 134 RAPLVTQSSRPAGYKYTANMRNPPAPQPA-------VHIQGQEXXXXXXXXXXXXQEQKQ 292
R P Q RPA + PP P A + I GQE QEQKQ
Sbjct: 529 RPPQQQQQQRPA----PTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQ 584
Query: 293 MLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVL 454
+LGER++ LI++++P AGKITGM+LEIDNSEL+ ML+ E ++KVDEA +VL
Sbjct: 585 LLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 640
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 81.0 bits (191), Expect = 5e-16
Identities = 41/83 (49%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Frame = +2
Query: 212 QPAVHIQGQEXXXXXXXXXXXXQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNS 385
Q + I GQE QEQKQ+LGER++ LI++M P+ AGKITGM+LEIDN+
Sbjct: 593 QSGIVIHGQETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNA 652
Query: 386 ELLHMLEHGESLKAKVDEAVAVL 454
EL+ ML+ E ++KV+EA VL
Sbjct: 653 ELIMMLQDAELFRSKVEEAFGVL 675
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 77 LGARPITGQQGVAGTAGSIRAPLVTQSSRPAGY-KYTANMRNPPAPQPAVHIQG 235
LG IT Q V P + PAG K TA R PPAP+P I G
Sbjct: 266 LGRTRITEQNPVKEAQAKESTPELADLPLPAGRRKSTAAPRAPPAPKPIPVING 319
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 1 ARGRKYATTLPSSTKSSNTGCITYFSRSKTNHRTTRC---CWHGWINPCTSCYSK 156
A+ K TT +TK+++T T + KT T++C C GW+ CY+K
Sbjct: 293 AKTTKSTTTTTKTTKTTSTPTTTT-TTPKTPFDTSKCTVMCSTGWVYYNNLCYAK 346
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 143 LVTQSSRPAGYKYTANMRNPPAPQ 214
LV + + AGY YT +N PAPQ
Sbjct: 1117 LVREYNEEAGYAYTLPRKNKPAPQ 1140
>AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein 2
protein.
Length = 298
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 98 GQQGVAGTAGSI-RAPLVTQSSRPAGYKYTANMRNPPAPQPAVHIQG 235
G+QGV+G G+ R + + PAG+K +R PP P+ + G
Sbjct: 203 GRQGVSGPKGAPGRINQINGPAGPAGHK---GVRGPPGPRGEAGLDG 246
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,849,925
Number of Sequences: 27780
Number of extensions: 219943
Number of successful extensions: 712
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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