Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A03
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0820 + 27951971-27954236,27954746-27955008,27955169-279552...    28   2.8  

>03_05_0820 +
           27951971-27954236,27954746-27955008,27955169-27955288,
           27957790-27957856,27958310-27958515
          Length = 973

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 301 LSTVYSSTGQLKNMPEFRIFFS*INLRK 218
           LS +Y+S G+ K+  E RI    INL+K
Sbjct: 718 LSNMYASCGKWKDAAEMRILMKGINLKK 745


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,610,442
Number of Sequences: 37544
Number of extensions: 78005
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)