Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A03
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    27   5.8  
U29380-16|AAS60254.1|  761|Caenorhabditis elegans Zygote defecti...    27   7.7  
AY487142-1|AAR32792.1|  109|Caenorhabditis elegans centrosome at...    27   7.7  

>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +2

Query: 356 ILVKMSTLNLIVLKTAMSSF 415
           +L+ +ST++LIVL TAM SF
Sbjct: 57  LLLSLSTIDLIVLITAMPSF 76


>U29380-16|AAS60254.1|  761|Caenorhabditis elegans Zygote defective:
           embryonic lethalprotein 12, isoform c protein.
          Length = 761

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 116 TILDTQQLFCKNLYRNLVVFLLIFVCWMIL 27
           T+LDTQ++     +  LV+  L+F+ WM +
Sbjct: 720 TLLDTQKMSGALPWSILVLGFLVFIAWMFI 749


>AY487142-1|AAR32792.1|  109|Caenorhabditis elegans centrosome
           attachment protein C protein.
          Length = 109

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 116 TILDTQQLFCKNLYRNLVVFLLIFVCWMIL 27
           T+LDTQ++     +  LV+  L+F+ WM +
Sbjct: 68  TLLDTQKMSGALPWSILVLGFLVFIAWMFI 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,827,825
Number of Sequences: 27780
Number of extensions: 94677
Number of successful extensions: 253
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)