Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A02
(478 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 35 0.006
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 27 1.1
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 27 1.5
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 1.9
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 2.6
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 25 5.9
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 25 5.9
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 5.9
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 35.1 bits (77), Expect = 0.006
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 69 PGLADLKNELQSWDWCYGKTPIF 137
P + NELQSW+W +G+TP F
Sbjct: 264 PSILKAVNELQSWEWTFGQTPSF 286
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 27.5 bits (58), Expect = 1.1
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +3
Query: 138 TVSRTFPV--PAEILAPSKVYSATQELVITMTVEKGLINDVTLNIPP 272
TVS T V PA S VYS TQE T+ G ++ I P
Sbjct: 673 TVSGTVEVIEPAAGTVTSTVYSGTQEYTTTLATASGTVSGTVEVIEP 719
Score = 27.1 bits (57), Expect = 1.5
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +3
Query: 138 TVSRTFPV--PAEILAPSKVYSATQELVITMTVEKGLINDVTLNIPP--GLVESGFHGEA 305
TVS T V PA + VYS TQE T+ G ++ I P G V + + +
Sbjct: 709 TVSGTVEVIEPAAGTVTTTVYSGTQEYTTTLATASGTVSGTVEVIEPAAGTVTTTVYSGS 768
Query: 306 SVIT 317
V T
Sbjct: 769 EVYT 772
Score = 26.2 bits (55), Expect = 2.6
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +3
Query: 138 TVSRTFPV--PAEILAPSKVYSATQELVITMTVEKGLINDVTLNIPP 272
TVS T V PA + VYS TQE T+ G ++ I P
Sbjct: 637 TVSGTVEVIEPAAGTVTTTVYSGTQEYTTTLATASGTVSGTVEVIEP 683
Score = 24.6 bits (51), Expect = 7.9
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Frame = +3
Query: 126 TPIFTVSRTFPVPAEILAP------SKVYSATQELVITMTVEKGLINDVTLNIPP 272
T + + + T P E++ P + VYS TQE T+ G ++ I P
Sbjct: 593 TTLASATDTVPGTVEVVEPEAGTVTTTVYSGTQEYTTTLATASGTVSGTVEVIEP 647
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 27.1 bits (57), Expect = 1.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 156 PVPAEILAPSKVYSATQELVITMTVEKGLINDVTLNIPPGLVESGF 293
P+P I +PS V + + VIT + +T+ PP V+S F
Sbjct: 346 PMPVLISSPSNVIAREELTVITQPNPSSDLLCLTVPTPPSYVKSDF 391
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 72 GLADLKNELQSWDWCYGKTPIFTVS 146
G L NEL +W YG TP F++S
Sbjct: 94 GSKTLTNELSTWS--YGLTPFFSIS 116
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 26.2 bits (55), Expect = 2.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 85 KSARPGNQSSVGLTNWN 35
K +RP +QSS+ L+NW+
Sbjct: 146 KKSRPSSQSSIFLSNWS 162
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 323 KRETIYRRSAKCSTGSHVDSSRHXVNVQ 406
K E + +A +TG H S +H +N++
Sbjct: 912 KSEAVTSNNAALNTGDHPVSIKHAINIK 939
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 338 KSFPF*MRDNRRFSVETGFDKPRRYVKGHVVNETLFHG 225
K+ PF ++ F V T D PR Y + + +F G
Sbjct: 237 KNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRG 274
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 162 PAEILAPSKVYSATQELVITMT 227
P +I AP+ Y+ATQE ++ T
Sbjct: 395 PQKITAPTSPYAATQEELLAFT 416
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,233
Number of Sequences: 5004
Number of extensions: 39170
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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