Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A02
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0214 - 19111493-19112413,19112674-19112750,19113843-191144...    28   3.4  
06_03_1513 - 30692833-30693258,30693365-30693541,30693807-306938...    27   5.9  

>05_04_0214 -
           19111493-19112413,19112674-19112750,19113843-19114412,
           19114605-19114754,19115499-19115643
          Length = 620

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 162 PAEILAPSKVYSATQELVITMTVEKGLINDVTLNIP 269
           P    A +   S TQE+ ++ TVE G  NDV L+ P
Sbjct: 510 PTSSSAINNQNSKTQEMSVSQTVELGCGNDVMLDWP 545


>06_03_1513 -
           30692833-30693258,30693365-30693541,30693807-30693818,
           30693988-30694033,30695070-30695365
          Length = 318

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 314 DNRRFSVETGFDKPRRYVKGHVVNETLFHGHSNNQF 207
           + R+ +VET  D+ R   K ++ N+  FH  ++ Q+
Sbjct: 159 EKRKLNVETSKDQNREREKLYLANQEKFHAGADKQY 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,962,800
Number of Sequences: 37544
Number of extensions: 263644
Number of successful extensions: 588
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)