Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A02
         (478 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070145-1|AAH70145.1|  373|Homo sapiens lipoyltransferase 1 pro...    51   2e-06
BC009772-1|AAH09772.1|  373|Homo sapiens lipoyltransferase 1 pro...    51   2e-06
BC007001-1|AAH07001.1|  373|Homo sapiens lipoyltransferase 1 pro...    51   2e-06
AC092587-2|AAX88927.1|  373|Homo sapiens unknown protein.              51   2e-06
AB017567-1|BAA76368.1|  373|Homo sapiens lipoyltransferase protein.    51   2e-06
AB017566-1|BAA76367.1|  373|Homo sapiens lipoyltransferase protein.    51   2e-06
DQ427109-1|ABD72605.1| 1048|Homo sapiens OTUD4: OTU domain conta...    33   0.68 
BC118653-1|AAI18654.1| 1049|Homo sapiens OTU domain containing 4...    33   0.68 
BC118572-1|AAI18573.1| 1049|Homo sapiens OTU domain containing 4...    33   0.68 

>BC070145-1|AAH70145.1|  373|Homo sapiens lipoyltransferase 1
           protein.
          Length = 373

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +3

Query: 45  VNPTDDW-FPGLADLKNELQSWDWCYGKTPIFTVSRTFPV 161
           +NPTD+  FPG+     ELQ+W+W YGKTP F+++ +F V
Sbjct: 248 INPTDETLFPGINSKAKELQTWEWIYGKTPKFSINTSFHV 287


>BC009772-1|AAH09772.1|  373|Homo sapiens lipoyltransferase 1
           protein.
          Length = 373

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +3

Query: 45  VNPTDDW-FPGLADLKNELQSWDWCYGKTPIFTVSRTFPV 161
           +NPTD+  FPG+     ELQ+W+W YGKTP F+++ +F V
Sbjct: 248 INPTDETLFPGINSKAKELQTWEWIYGKTPKFSINTSFHV 287


>BC007001-1|AAH07001.1|  373|Homo sapiens lipoyltransferase 1
           protein.
          Length = 373

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +3

Query: 45  VNPTDDW-FPGLADLKNELQSWDWCYGKTPIFTVSRTFPV 161
           +NPTD+  FPG+     ELQ+W+W YGKTP F+++ +F V
Sbjct: 248 INPTDETLFPGINSKAKELQTWEWIYGKTPKFSINTSFHV 287


>AC092587-2|AAX88927.1|  373|Homo sapiens unknown protein.
          Length = 373

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +3

Query: 45  VNPTDDW-FPGLADLKNELQSWDWCYGKTPIFTVSRTFPV 161
           +NPTD+  FPG+     ELQ+W+W YGKTP F+++ +F V
Sbjct: 248 INPTDETLFPGINSKAKELQTWEWIYGKTPKFSINTSFHV 287


>AB017567-1|BAA76368.1|  373|Homo sapiens lipoyltransferase protein.
          Length = 373

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +3

Query: 45  VNPTDDW-FPGLADLKNELQSWDWCYGKTPIFTVSRTFPV 161
           +NPTD+  FPG+     ELQ+W+W YGKTP F+++ +F V
Sbjct: 248 INPTDETLFPGINSKAKELQTWEWIYGKTPKFSINTSFHV 287


>AB017566-1|BAA76367.1|  373|Homo sapiens lipoyltransferase protein.
          Length = 373

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +3

Query: 45  VNPTDDW-FPGLADLKNELQSWDWCYGKTPIFTVSRTFPV 161
           +NPTD+  FPG+     ELQ+W+W YGKTP F+++ +F V
Sbjct: 248 INPTDETLFPGINSKAKELQTWEWIYGKTPKFSINTSFHV 287


>DQ427109-1|ABD72605.1| 1048|Homo sapiens OTUD4: OTU domain
           containing 4 protein.
          Length = 1048

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 95  VAKLGLVLRKNANLYREPNVSGS--CRDTCTIKSLLCHSRTGYYYD 226
           ++ L L+ RK+  +YREPNVS S    +    K LLC S  G +YD
Sbjct: 41  ISALSLMYRKDFIIYREPNVSPSQVTENNFPEKVLLCFS-NGNHYD 85


>BC118653-1|AAI18654.1| 1049|Homo sapiens OTU domain containing 4
           protein.
          Length = 1049

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 95  VAKLGLVLRKNANLYREPNVSGS--CRDTCTIKSLLCHSRTGYYYD 226
           ++ L L+ RK+  +YREPNVS S    +    K LLC S  G +YD
Sbjct: 41  ISALSLMYRKDFIIYREPNVSPSQVTENNFPEKVLLCFS-NGNHYD 85


>BC118572-1|AAI18573.1| 1049|Homo sapiens OTU domain containing 4
           protein.
          Length = 1049

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 95  VAKLGLVLRKNANLYREPNVSGS--CRDTCTIKSLLCHSRTGYYYD 226
           ++ L L+ RK+  +YREPNVS S    +    K LLC S  G +YD
Sbjct: 41  ISALSLMYRKDFIIYREPNVSPSQVTENNFPEKVLLCFS-NGNHYD 85


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,662,765
Number of Sequences: 237096
Number of extensions: 1451414
Number of successful extensions: 3351
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3351
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4213781852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)