Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A02
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92780-3|CAB07178.2|  289|Caenorhabditis elegans Hypothetical pr...    32   0.24 
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    31   0.57 
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    31   0.57 
U41268-4|AAL02521.1|  168|Caenorhabditis elegans Forkhead transc...    27   5.3  
U41268-3|AAA82436.1|  270|Caenorhabditis elegans Forkhead transc...    27   5.3  
Z70287-6|CAH04747.1|  443|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    27   7.0  

>Z92780-3|CAB07178.2|  289|Caenorhabditis elegans Hypothetical
           protein C45G3.3 protein.
          Length = 289

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 75  LADLKNELQSWDWCYGKTPIFTVSR 149
           ++ + +EL++W W YGK+P F  SR
Sbjct: 241 ISKIFDELKAWKWIYGKSPKFQYSR 265


>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -1

Query: 430 CCFVVPTCLDVHXVT*RVNMA-SCRAFSASAVNRFPFRCVITDASPWKPDSTSPGGMLRV 254
           CC++  +CLD+  V    N   +C   S    NR     +I +   W         +L V
Sbjct: 527 CCWICESCLDIQYVNKTTNQCMNCTLGSWPNANRTGCEYIIPEVVSWTSFGHILALVLAV 586

Query: 253 TSLMRPFSTVIV 218
           T ++   +T+ V
Sbjct: 587 TGIITSMATLAV 598


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -1

Query: 430 CCFVVPTCLDVHXVT*RVNMA-SCRAFSASAVNRFPFRCVITDASPWKPDSTSPGGMLRV 254
           CC++  +CLD+  V    N   +C   S    NR     +I +   W         +L V
Sbjct: 527 CCWICESCLDIQYVNKTTNQCMNCTLGSWPNANRTGCEYIIPEVVSWTSFGHILALVLAV 586

Query: 253 TSLMRPFSTVIV 218
           T ++   +T+ V
Sbjct: 587 TGIITSMATLAV 598


>U41268-4|AAL02521.1|  168|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 2, isoform b protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 382 RVNMASCRAFSASAVNRFPFRCVITDASPWKPDSTSPGGML 260
           R  M + + + A+A N FP+      A P  P  T+P G L
Sbjct: 93  RARMDAYKQYGAAAANLFPYFSPGMPALPRHPYLTAPNGFL 133


>U41268-3|AAA82436.1|  270|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 2, isoform a protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 382 RVNMASCRAFSASAVNRFPFRCVITDASPWKPDSTSPGGML 260
           R  M + + + A+A N FP+      A P  P  T+P G L
Sbjct: 195 RARMDAYKQYGAAAANLFPYFSPGMPALPRHPYLTAPNGFL 235


>Z70287-6|CAH04747.1|  443|Caenorhabditis elegans Hypothetical
           protein R09E10.9 protein.
          Length = 443

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 120 GKTPIFTVSRTFPVPAEILAPSKVY-SATQELVITMTVEKGLINDV 254
           G +P      T PVP+ I +PSKV  +  Q+ +IT TV   +I  V
Sbjct: 335 GVSPSPVPVSTPPVPSTIPSPSKVVPNPPQKSLITPTVPPSMIQTV 380


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
           protein F53G12.3 protein.
          Length = 1503

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 338 YRRSAKCSTGSHVDSSRHXVNVQTSWDDKAAI 433
           YR     +TG+ ++S R  +N +TSW D + I
Sbjct: 154 YRAKYDKATGNGLNSPREQINERTSWIDGSFI 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,933,819
Number of Sequences: 27780
Number of extensions: 222489
Number of successful extensions: 545
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)