Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_A02
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   1.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   1.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.9  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   6.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.0  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 305 VGYHASKRETIYRRSAKCS-TGSHVDSSRHXVNVQTSWDDKAAIRSEML*PSR 460
           V Y+  KR+  + R  + + T S     R  V +   WD K  +  E+L P+R
Sbjct: 36  VVYNNIKRKRSWSRPRESAQTTSKAGIHRKKVLLLVWWDHKGIVYFELLPPNR 88


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 305 VGYHASKRETIYRRSAK-CSTGSHVDSSRHXVNVQTSWDDKAAIRSEML*PSR 460
           V Y+  KR+  + R  +   T S     R  V +   WD K  +  E+L P+R
Sbjct: 157 VVYNNIKRKRSWSRPREPAQTTSKAGIHRKKVLLSVWWDYKGIVYFELLPPNR 209


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 198 ATQELVITMTVEKGLINDVTLNI 266
           A+   + ++TVEK +INDV   I
Sbjct: 861 ASSTSINSITVEKDVINDVKTQI 883


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 323 KRETIYRRSAK-CSTGSHVDSSRHXVNVQTSWDDKAAIRSEML*PSR 460
           KR+  + R  +   T S     R  V +   WD K  +  E+L P+R
Sbjct: 41  KRKRWWSRPREPAQTTSKAGIHRKKVLLSVWWDYKGIVYFELLSPNR 87


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 299 SVETGFDKPRRYVKGHVVNETLFHGHS 219
           S  T     ++++K  VVN+ + H H+
Sbjct: 391 STTTSTTISQKHIKVFVVNKDILHEHN 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,586
Number of Sequences: 438
Number of extensions: 2346
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)