Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_A01
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 173 6e-44
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 170 5e-43
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 29 2.4
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955... 28 3.2
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 4.2
04_04_1631 - 34919197-34919205,34919865-34920204,34920418-349207... 28 4.2
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392... 27 5.6
02_02_0343 + 9163976-9165220 27 7.3
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 173 bits (421), Expect = 6e-44
Identities = 81/133 (60%), Positives = 94/133 (70%)
Frame = +1
Query: 64 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 243
GFVK K YFKR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 244 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTG 423
Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG D Y G
Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 119
Query: 424 ATEVTGDEYNVEP 462
E TG++Y VEP
Sbjct: 120 NVEATGEDYYVEP 132
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 170 bits (413), Expect = 5e-43
Identities = 80/133 (60%), Positives = 93/133 (69%)
Frame = +1
Query: 64 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 243
GFVK K Y KR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 244 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTG 423
Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG D Y G
Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEG 119
Query: 424 ATEVTGDEYNVEP 462
E TG++Y VEP
Sbjct: 120 NIEATGEDYYVEP 132
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +2
Query: 338 LTMLLPTAL-VCCWQEDCCRGSA 403
L++L PT L CW DCC GS+
Sbjct: 691 LSVLEPTFLNESCWSSDCCSGSS 713
>10_06_0008 -
9533424-9533475,9533526-9535344,9535599-9536364,
9551969-9552097
Length = 921
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 444 ITSDFSGTC-VETVQAEPLQQSSCQQQTSAVGSSIVSQTHLDTIAWEFMRVGSTDNVIT 271
+ + TC VET +AEP + + S VGSS ++ W F V + N +T
Sbjct: 264 VRQSLAWTCFVETPRAEPAPVVPQEGEASGVGSSEAPSLFAGSV-WGFQMVTTRRNAVT 321
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 187 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 309
+YNT +YR + +S K V C+ + + E DH+ A S L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316
>04_04_1631 -
34919197-34919205,34919865-34920204,34920418-34920726,
34920781-34921307,34921700-34921852,34922102-34922186,
34922360-34922364
Length = 475
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -3
Query: 460 VQHYIHHQ*LQWHLCRDCPSRASATI--FLPATDQCSRQQHS*SNPP-*YHSVGVHESRQ 290
+ I +Q +Q + RD ++ I L +T CSR++ NPP H HE ++
Sbjct: 40 IHEQIQNQAMQAQVHRDEIMQSMKMIQEMLSSTASCSRKEAKVDNPPHGQHDNVTHEQQR 99
Query: 289 HR 284
HR
Sbjct: 100 HR 101
>05_01_0479 -
3920992-3921513,3921643-3921756,3921905-3922482,
3922709-3923067,3923132-3923205
Length = 548
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -1
Query: 393 LQQSSCQQQTSAVGSSIVSQTHLDTIAWEFMRVGSTDNVITLN---A*VCNLTGNIFIG* 223
LQ + Q + S G+ ++S +I W V T + T+N + V + GN+ IG
Sbjct: 32 LQLNLTQLKLSRDGNLVISNNATGSILWSTDIVNRTSSATTMNNTASVVLSNDGNLVIG- 90
Query: 222 PYNQSVLW 199
+ +VLW
Sbjct: 91 -SSSNVLW 97
>02_02_0343 + 9163976-9165220
Length = 414
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 369 QTSAVGSSIVSQTHLDTIAWEFMRVGSTDNVITLN 265
Q+ A+ S++ S THL + E + V D +ITLN
Sbjct: 209 QSMALLSNLTSLTHLTLLECEDLTVDGFDPLITLN 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,525,531
Number of Sequences: 37544
Number of extensions: 243571
Number of successful extensions: 590
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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