Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_P23
(240 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 1.0
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 25 1.3
SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po... 25 1.3
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 24 2.3
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 23 4.1
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 23 5.4
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 23 5.4
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 23 5.4
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 23 7.1
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S... 23 7.1
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 22 9.4
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch... 22 9.4
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.4 bits (53), Expect = 1.0
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +3
Query: 21 INKLNFVKLLWVIKTYIHWMLICIFNYAVSIALSA 125
++K+N + W+I + + I N+A++ A+ A
Sbjct: 832 LHKVNVFAVYWLILAIVQFFAYAISNFAMTYAMEA 866
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 25.0 bits (52), Expect = 1.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 233 PRNEQTRQDTTDCYVDITSKH 171
P N+ T Q TD YV+++ K+
Sbjct: 269 PENKLTYQQLTDLYVELSKKY 289
>SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 107
Score = 25.0 bits (52), Expect = 1.3
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 63 TYIHWMLICIFNYAVSIALSAPNIPPARDIVIHKIEMFGCNINITICGVLSCLFIPGQS 239
+Y++ +F LS I A+D+ + +I TIC + L +PG+S
Sbjct: 13 SYLYQASQLLFRNVQEPTLSRHYISTAKDVSQKSVMRIHPDIKRTICKGCNSLLVPGKS 71
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 36 FVKLLWVIKTYIHWMLICIFNYAVSIA 116
F + +W +KT H ++ + NY VS A
Sbjct: 152 FRQEIWALKTLSHPCVVQLLNYYVSSA 178
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 41 QITLGYKNI--YSLDVNLYF*LRCIYCFVS 124
QI +G N Y + N+Y L+ +YC VS
Sbjct: 137 QIVVGESNCSAYGMKENIYTCLKDLYCSVS 166
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +3
Query: 177 GCNINITICGVLSCLFIPGQ 236
GC++++ CG+L L + G+
Sbjct: 198 GCDVDVWGCGILLYLMLVGE 217
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 23.0 bits (47), Expect = 5.4
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 37 SSNYFGL*KHIFIGC*FVFLITLYLLLCQHLTFHLRAT 150
SS+ F L I C F+F +TL+ L Q + F+L +T
Sbjct: 144 SSSRFSLSTSITHSCVFMFGLTLFSRLIQ-IPFNLYST 180
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 37 SSNYFGL*KHIFIGC*FVFLITLYLLLCQHLTFH 138
SSNY+ +F+ C VF + L Q T+H
Sbjct: 24 SSNYYWAVFAVFLLCAIVFPLVSIFSLPQKQTYH 57
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 195 TICGVLSCLFIP 230
TI GV+SC+ IP
Sbjct: 500 TILGVISCIMIP 511
>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 116
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -2
Query: 236 LPRNEQTRQDTTDCYVDITSKHFNFM 159
LP N + ++ DC D S+ +F+
Sbjct: 25 LPENAKISKEAKDCVQDCVSEFISFV 50
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 94 LITLYLLLCQHLTFHLRA 147
LI L +LLCQH+ + A
Sbjct: 1028 LILLKMLLCQHVNLDIYA 1045
>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 202
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 84 ICIFNYAVSIALSAPNIPPA 143
I IFN A +LS P PPA
Sbjct: 139 IYIFNKAAEGSLSRPFAPPA 158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,032,193
Number of Sequences: 5004
Number of extensions: 18424
Number of successful extensions: 43
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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