Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P23
         (240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical pr...    27   1.3  
AF067214-10|AAC17009.1|  206|Caenorhabditis elegans Hypothetical...    26   3.1  
Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF100669-11|AAK39270.2|  737|Caenorhabditis elegans Dipeptidyl p...    25   9.5  
AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    25   9.5  
AF016439-1|AAB65898.3|  721|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical
           protein T01G9.3 protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 232 PGMNRQDKTPQIVMLILHPNISILCITMSRAGGM 131
           P M+R  + P + +L LH N +I   TMS  GGM
Sbjct: 102 PAMSRSIRLPSLEVLDLHSN-NIEHATMSNFGGM 134


>AF067214-10|AAC17009.1|  206|Caenorhabditis elegans Hypothetical
           protein F56C3.9 protein.
          Length = 206

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 109 DTA*LKIQINIQ*IYVFITQSNLTKLSLFIHIL 11
           +TA  K QIN Q   +++  + L +LS + HIL
Sbjct: 12  ETALRKFQINTQSDTIYVNLNYLAELSEYFHIL 44


>Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical
           protein F25D7.1 protein.
          Length = 245

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 60  KTYIHWMLICIFNYAVSIALSA 125
           +T  HW+++C F Y  S AL +
Sbjct: 66  QTGFHWLMMCYFLYNYSKALES 87


>AF100669-11|AAK39270.2|  737|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 5 protein.
          Length = 737

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 75  WMLICIFNYAVSIALSAPNIPP 140
           W L+ +++  V   +SAPN PP
Sbjct: 419 WSLLDVYDNEVLAVVSAPNRPP 440


>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 172 CLDVIST*QSVVSCLVCSFLGN 237
           CL   S   S+++CL C F+G+
Sbjct: 336 CLAGASIVLSIIACLTCCFIGS 357


>AF016439-1|AAB65898.3|  721|Caenorhabditis elegans Hypothetical
           protein R02F11.2 protein.
          Length = 721

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 84  ICIFNYAVSIALSAPNIPPARDIVIHKIEMFGCNINITICGVLSC 218
           +C++N +    L +    P+ D +   +  FGC ++   CG+  C
Sbjct: 594 VCVYNASEDEGLFSQIYFPSGDRIQEVV--FGCEVSKECCGMKCC 636


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,712,398
Number of Sequences: 27780
Number of extensions: 105007
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)