Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P23
         (240 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   3.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   3.7  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               20   4.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   6.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   6.4  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    19   8.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   8.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   8.5  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    19   8.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 236 LPRNEQTRQDTTDCYVDITSKHF 168
           LP+ + +   TTDC ++ ++ +F
Sbjct: 178 LPQLDISNNYTTDCTIEYSTGNF 200


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 200 DCYVDITSKHFNFMYYYVARRW 135
           DC V +    F+ +Y  +  RW
Sbjct: 91  DCLVGLVVMPFSAIYEVLENRW 112


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 98  LRCIYCFVS 124
           LRCIY F+S
Sbjct: 5   LRCIYLFLS 13


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 198 ICGVLSCLFIPG 233
           +CG+ S L IPG
Sbjct: 534 LCGLSSMLCIPG 545


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 198 ICGVLSCLFIPG 233
           +CG+ S L IPG
Sbjct: 587 LCGLSSMLCIPG 598


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 227 NEQTRQDTTDCYVDITS 177
           N++ R    DC++D  S
Sbjct: 38  NDRLRNQYYDCFIDAGS 54


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +3

Query: 63  TYIHWMLICIFNYAVSIAL 119
           T + W L+  F Y ++  L
Sbjct: 305 TALDWFLLMSFGYCIATLL 323


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 165 IEMFGCNINITICGVLSCLFIPG 233
           +  F CNI   IC  L+    PG
Sbjct: 633 LPFFTCNIMDAICTKLTADCQPG 655


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 227 NEQTRQDTTDCYVDITS 177
           N++ R    DC++D  S
Sbjct: 38  NDRLRNQYYDCFIDAGS 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,165
Number of Sequences: 438
Number of extensions: 1677
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)