Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_P21
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   1.7  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    22   3.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.9  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -1

Query: 458 DDDDRVATP--APPETVTVDK 402
           +D+D  ATP  APP+  T DK
Sbjct: 218 EDEDDGATPRKAPPQLSTTDK 238


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 430 PPRRPLRSIKVLEPDSSTGS 371
           PP RP R  +  EP++  G+
Sbjct: 25  PPTRPTRLRREAEPEAEPGN 44


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 461 ADDDDRVATPAPPETVTVDKSP 396
           ADD D     A P   T DK P
Sbjct: 40  ADDSDEEELSARPSFKTFDKGP 61


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 307  VPDAARSHEASTQRTRLHL 363
            +P+AAR  E +T    LHL
Sbjct: 1463 IPEAARFIEVATNSITLHL 1481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,405
Number of Sequences: 438
Number of extensions: 2558
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)